Strain Fitness in Marinobacter adhaerens HP15 around HP15_1290

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1289 and HP15_1290 are separated by 86 nucleotidesHP15_1290 and HP15_1291 are separated by 184 nucleotidesHP15_1291 and HP15_1292 are separated by 45 nucleotides HP15_1289: HP15_1289 - electron transport complex, RnfABCDGE type, C subunit, at 1,348,616 to 1,350,358 _1289 HP15_1290: HP15_1290 - electron transport complex, RnfABCDGE type, B subunit, at 1,350,445 to 1,350,867 _1290 HP15_1291: HP15_1291 - electron transport complex, RnfA, at 1,351,052 to 1,351,633 _1291 HP15_1292: HP15_1292 - methionyl-tRNA synthetase, at 1,351,679 to 1,353,709 _1292 Position (kb) 1350 1351Strain fitness (log2 ratio) -2 -1 0 1at 1349.612 kb on - strand, within HP15_1289at 1349.717 kb on - strand, within HP15_1289at 1349.733 kb on + strand, within HP15_1289at 1349.814 kb on + strand, within HP15_1289at 1349.967 kb on + strand, within HP15_1289at 1350.116 kb on + strand, within HP15_1289at 1350.305 kb on - strandat 1350.384 kb on + strandat 1350.392 kb on - strandat 1350.528 kb on - strand, within HP15_1290at 1350.603 kb on - strand, within HP15_1290at 1350.649 kb on + strand, within HP15_1290at 1350.712 kb on - strand, within HP15_1290at 1350.924 kb on - strandat 1350.928 kb on + strandat 1350.936 kb on - strandat 1350.936 kb on - strandat 1350.936 kb on - strandat 1350.936 kb on - strandat 1351.280 kb on + strand, within HP15_1291at 1351.280 kb on + strand, within HP15_1291at 1351.280 kb on + strand, within HP15_1291at 1351.406 kb on + strand, within HP15_1291at 1351.413 kb on + strand, within HP15_1291at 1351.459 kb on - strand, within HP15_1291at 1351.553 kb on - strand, within HP15_1291at 1351.569 kb on + strand, within HP15_1291at 1351.602 kb on + strandat 1351.684 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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1,349,612 - HP15_1289 0.57 -0.5
1,349,717 - HP15_1289 0.63 -0.5
1,349,733 + HP15_1289 0.64 +0.6
1,349,814 + HP15_1289 0.69 +0.3
1,349,967 + HP15_1289 0.78 -0.5
1,350,116 + HP15_1289 0.86 -0.2
1,350,305 - -0.5
1,350,384 + -0.9
1,350,392 - +0.2
1,350,528 - HP15_1290 0.20 +0.4
1,350,603 - HP15_1290 0.37 -1.7
1,350,649 + HP15_1290 0.48 -1.2
1,350,712 - HP15_1290 0.63 -0.6
1,350,924 - +0.3
1,350,928 + -0.5
1,350,936 - -0.1
1,350,936 - -0.1
1,350,936 - -0.5
1,350,936 - -1.8
1,351,280 + HP15_1291 0.39 +0.1
1,351,280 + HP15_1291 0.39 -2.0
1,351,280 + HP15_1291 0.39 -0.2
1,351,406 + HP15_1291 0.61 -1.2
1,351,413 + HP15_1291 0.62 -0.7
1,351,459 - HP15_1291 0.70 -0.3
1,351,553 - HP15_1291 0.86 -0.2
1,351,569 + HP15_1291 0.89 +0.4
1,351,602 + -0.3
1,351,684 - -0.2

Or see this region's nucleotide sequence