Strain Fitness in Marinobacter adhaerens HP15 around HP15_1216

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1214 and HP15_1215 are separated by 74 nucleotidesHP15_1215 and HP15_1216 are separated by 74 nucleotidesHP15_1216 and HP15_1217 overlap by 2 nucleotidesHP15_1217 and HP15_1218 are separated by 11 nucleotides HP15_1214: HP15_1214 - methyl-accepting chemotaxis sensory transducer, at 1,262,449 to 1,264,695 _1214 HP15_1215: HP15_1215 - ribonuclease T, at 1,264,770 to 1,265,396 _1215 HP15_1216: HP15_1216 - dihydroorotase, homodimeric type, at 1,265,471 to 1,266,502 _1216 HP15_1217: HP15_1217 - hypothetical protein, at 1,266,501 to 1,266,674 _1217 HP15_1218: HP15_1218 - OmpA/MotB domain protein, at 1,266,686 to 1,267,603 _1218 Position (kb) 1265 1266 1267Strain fitness (log2 ratio) -3 -2 -1 0 1at 1264.612 kb on + strandat 1264.620 kb on - strandat 1264.645 kb on + strandat 1264.789 kb on - strandat 1265.332 kb on + strand, within HP15_1215at 1265.850 kb on + strand, within HP15_1216at 1266.258 kb on + strand, within HP15_1216at 1266.491 kb on - strandat 1266.717 kb on - strandat 1266.717 kb on - strandat 1266.802 kb on + strand, within HP15_1218at 1266.869 kb on + strand, within HP15_1218at 1266.994 kb on - strand, within HP15_1218at 1267.112 kb on - strand, within HP15_1218at 1267.137 kb on + strand, within HP15_1218at 1267.241 kb on - strand, within HP15_1218at 1267.246 kb on - strand, within HP15_1218at 1267.246 kb on - strand, within HP15_1218at 1267.297 kb on - strand, within HP15_1218at 1267.302 kb on - strand, within HP15_1218at 1267.436 kb on - strand, within HP15_1218

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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1,264,612 + +0.1
1,264,620 - +0.5
1,264,645 + -1.7
1,264,789 - +0.3
1,265,332 + HP15_1215 0.90 +0.3
1,265,850 + HP15_1216 0.37 -3.0
1,266,258 + HP15_1216 0.76 -1.8
1,266,491 - +0.6
1,266,717 - -0.4
1,266,717 - +0.6
1,266,802 + HP15_1218 0.13 +1.4
1,266,869 + HP15_1218 0.20 +0.6
1,266,994 - HP15_1218 0.34 +0.7
1,267,112 - HP15_1218 0.46 +0.1
1,267,137 + HP15_1218 0.49 +0.6
1,267,241 - HP15_1218 0.60 +0.1
1,267,246 - HP15_1218 0.61 +0.5
1,267,246 - HP15_1218 0.61 +0.3
1,267,297 - HP15_1218 0.67 +0.5
1,267,302 - HP15_1218 0.67 +0.3
1,267,436 - HP15_1218 0.82 +0.4

Or see this region's nucleotide sequence