Strain Fitness in Marinobacter adhaerens HP15 around HP15_1054

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1052 and HP15_1053 are separated by 39 nucleotidesHP15_1053 and HP15_1054 are separated by 45 nucleotidesHP15_1054 and HP15_1055 overlap by 4 nucleotides HP15_1052: HP15_1052 - peptidase S16, lon domain-containing protein, at 1,072,406 to 1,074,813 _1052 HP15_1053: HP15_1053 - two component transcriptional regulator, LuxR family, at 1,074,853 to 1,075,479 _1053 HP15_1054: HP15_1054 - multi-sensor signal transduction histidine kinase, at 1,075,525 to 1,077,102 _1054 HP15_1055: HP15_1055 - MaoC domain protein, at 1,077,099 to 1,077,925 _1055 Position (kb) 1075 1076 1077 1078Strain fitness (log2 ratio) -3 -2 -1 0 1at 1074.530 kb on - strand, within HP15_1052at 1074.685 kb on + strandat 1074.704 kb on + strandat 1074.709 kb on + strandat 1074.838 kb on + strandat 1075.223 kb on + strand, within HP15_1053at 1075.231 kb on - strand, within HP15_1053at 1075.249 kb on - strand, within HP15_1053at 1075.387 kb on - strand, within HP15_1053at 1075.452 kb on - strandat 1075.659 kb on + strandat 1075.730 kb on + strand, within HP15_1054at 1075.738 kb on - strand, within HP15_1054at 1075.757 kb on - strand, within HP15_1054at 1076.071 kb on + strand, within HP15_1054at 1076.204 kb on + strand, within HP15_1054at 1076.503 kb on - strand, within HP15_1054at 1077.043 kb on + strandat 1077.105 kb on - strandat 1077.152 kb on + strandat 1077.165 kb on - strandat 1077.364 kb on - strand, within HP15_1055at 1077.371 kb on - strand, within HP15_1055at 1077.661 kb on + strand, within HP15_1055at 1077.713 kb on - strand, within HP15_1055at 1077.795 kb on + strand, within HP15_1055at 1077.821 kb on - strand, within HP15_1055at 1077.984 kb on - strandat 1078.085 kb on - strandat 1078.087 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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1,074,530 - HP15_1052 0.88 +0.5
1,074,685 + -0.2
1,074,704 + -0.4
1,074,709 + +0.7
1,074,838 + -0.1
1,075,223 + HP15_1053 0.59 -2.8
1,075,231 - HP15_1053 0.60 -0.6
1,075,249 - HP15_1053 0.63 -1.1
1,075,387 - HP15_1053 0.85 -0.6
1,075,452 - -1.3
1,075,659 + -0.4
1,075,730 + HP15_1054 0.13 -0.9
1,075,738 - HP15_1054 0.13 -1.3
1,075,757 - HP15_1054 0.15 -0.8
1,076,071 + HP15_1054 0.35 +0.4
1,076,204 + HP15_1054 0.43 -0.5
1,076,503 - HP15_1054 0.62 -1.9
1,077,043 + -0.4
1,077,105 - -0.0
1,077,152 + -0.1
1,077,165 - +0.8
1,077,364 - HP15_1055 0.32 +0.1
1,077,371 - HP15_1055 0.33 +0.0
1,077,661 + HP15_1055 0.68 -0.7
1,077,713 - HP15_1055 0.74 +0.5
1,077,795 + HP15_1055 0.84 +0.3
1,077,821 - HP15_1055 0.87 -1.6
1,077,984 - -0.7
1,078,085 - +0.9
1,078,087 + -0.4

Or see this region's nucleotide sequence