Strain Fitness in Marinobacter adhaerens HP15 around HP15_1025

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1023 and HP15_1024 are separated by 90 nucleotidesHP15_1024 and HP15_1025 overlap by 15 nucleotidesHP15_1025 and HP15_1026 are separated by 20 nucleotidesHP15_1026 and HP15_1027 are separated by 49 nucleotides HP15_1023: HP15_1023 - 6-aminohexanoate-cyclic-dimer hydrolase, at 1,039,936 to 1,041,432 _1023 HP15_1024: HP15_1024 - hypothetical protein, at 1,041,523 to 1,041,708 _1024 HP15_1025: HP15_1025 - isoprenylcysteine carboxyl methyltransferase-like protein, at 1,041,694 to 1,042,203 _1025 HP15_1026: HP15_1026 - DnaJ-like membrane chaperone protein, at 1,042,224 to 1,043,003 _1026 HP15_1027: HP15_1027 - chemotactic transducer-related protein, at 1,043,053 to 1,045,878 _1027 Position (kb) 1041 1042 1043Strain fitness (log2 ratio) -2 -1 0 1 2at 1040.731 kb on + strand, within HP15_1023at 1040.731 kb on + strand, within HP15_1023at 1040.739 kb on - strand, within HP15_1023at 1040.819 kb on - strand, within HP15_1023at 1040.823 kb on + strand, within HP15_1023at 1040.823 kb on + strand, within HP15_1023at 1040.860 kb on - strand, within HP15_1023at 1040.906 kb on - strand, within HP15_1023at 1040.970 kb on + strand, within HP15_1023at 1041.190 kb on - strand, within HP15_1023at 1041.195 kb on - strand, within HP15_1023at 1041.213 kb on - strand, within HP15_1023at 1041.314 kb on - strandat 1041.415 kb on - strandat 1041.514 kb on + strandat 1041.682 kb on - strand, within HP15_1024at 1041.682 kb on - strand, within HP15_1024at 1041.684 kb on + strand, within HP15_1024at 1041.692 kb on - strandat 1041.708 kb on + strandat 1041.716 kb on - strandat 1041.763 kb on - strand, within HP15_1025at 1041.796 kb on + strand, within HP15_1025at 1041.978 kb on + strand, within HP15_1025at 1042.025 kb on - strand, within HP15_1025at 1042.214 kb on + strandat 1042.369 kb on - strand, within HP15_1026at 1042.418 kb on - strand, within HP15_1026at 1042.465 kb on - strand, within HP15_1026at 1042.491 kb on + strand, within HP15_1026at 1042.538 kb on - strand, within HP15_1026at 1042.623 kb on + strand, within HP15_1026at 1042.631 kb on - strand, within HP15_1026at 1042.653 kb on + strand, within HP15_1026at 1042.718 kb on - strand, within HP15_1026at 1042.779 kb on - strand, within HP15_1026at 1042.813 kb on + strand, within HP15_1026at 1042.813 kb on + strand, within HP15_1026at 1042.825 kb on + strand, within HP15_1026at 1042.826 kb on - strand, within HP15_1026at 1043.000 kb on + strandat 1043.008 kb on - strandat 1043.181 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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1,040,731 + HP15_1023 0.53 +1.4
1,040,731 + HP15_1023 0.53 +2.4
1,040,739 - HP15_1023 0.54 +2.0
1,040,819 - HP15_1023 0.59 -0.9
1,040,823 + HP15_1023 0.59 +0.7
1,040,823 + HP15_1023 0.59 +0.1
1,040,860 - HP15_1023 0.62 +1.3
1,040,906 - HP15_1023 0.65 +0.1
1,040,970 + HP15_1023 0.69 -0.2
1,041,190 - HP15_1023 0.84 +0.0
1,041,195 - HP15_1023 0.84 -0.1
1,041,213 - HP15_1023 0.85 +0.8
1,041,314 - +0.9
1,041,415 - -0.8
1,041,514 + +0.4
1,041,682 - HP15_1024 0.85 -0.2
1,041,682 - HP15_1024 0.85 -0.4
1,041,684 + HP15_1024 0.87 +0.7
1,041,692 - -1.9
1,041,708 + +0.4
1,041,716 - -0.2
1,041,763 - HP15_1025 0.14 +0.3
1,041,796 + HP15_1025 0.20 -0.9
1,041,978 + HP15_1025 0.56 -0.4
1,042,025 - HP15_1025 0.65 -1.2
1,042,214 + -0.2
1,042,369 - HP15_1026 0.19 +0.0
1,042,418 - HP15_1026 0.25 +0.8
1,042,465 - HP15_1026 0.31 -0.2
1,042,491 + HP15_1026 0.34 -0.1
1,042,538 - HP15_1026 0.40 -0.1
1,042,623 + HP15_1026 0.51 +0.3
1,042,631 - HP15_1026 0.52 +0.6
1,042,653 + HP15_1026 0.55 -0.1
1,042,718 - HP15_1026 0.63 -0.0
1,042,779 - HP15_1026 0.71 +0.5
1,042,813 + HP15_1026 0.76 -0.3
1,042,813 + HP15_1026 0.76 +0.7
1,042,825 + HP15_1026 0.77 -1.5
1,042,826 - HP15_1026 0.77 -0.3
1,043,000 + -0.0
1,043,008 - +0.5
1,043,181 - -0.6

Or see this region's nucleotide sequence