Strain Fitness in Marinobacter adhaerens HP15 around HP15_1000

Experiment: L-Isoleucine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_999 and HP15_1000 are separated by 94 nucleotidesHP15_1000 and HP15_1001 are separated by 14 nucleotidesHP15_1001 and HP15_1002 overlap by 1 nucleotides HP15_999: HP15_999 - acyl-CoA synthase, at 1,008,186 to 1,009,832 _999 HP15_1000: HP15_1000 - uncharacterized peroxidase-related protein, at 1,009,927 to 1,010,502 _1000 HP15_1001: HP15_1001 - pyruvate carboxyltransferase, at 1,010,517 to 1,011,422 _1001 HP15_1002: HP15_1002 - methylcrotonyl-CoA carboxylase, alpha subunit, at 1,011,422 to 1,013,416 _1002 Position (kb) 1009 1010 1011Strain fitness (log2 ratio) -1 0 1at 1008.931 kb on - strand, within HP15_999at 1008.938 kb on - strand, within HP15_999at 1008.981 kb on + strand, within HP15_999at 1008.989 kb on - strand, within HP15_999at 1009.038 kb on + strand, within HP15_999at 1009.070 kb on + strand, within HP15_999at 1009.097 kb on - strand, within HP15_999at 1009.120 kb on - strand, within HP15_999at 1009.211 kb on - strand, within HP15_999at 1009.211 kb on - strand, within HP15_999at 1009.216 kb on - strand, within HP15_999at 1009.240 kb on + strand, within HP15_999at 1009.411 kb on + strand, within HP15_999at 1009.419 kb on - strand, within HP15_999at 1009.419 kb on - strand, within HP15_999at 1009.499 kb on - strand, within HP15_999at 1009.563 kb on - strand, within HP15_999at 1009.686 kb on + strandat 1009.755 kb on + strandat 1009.755 kb on + strandat 1009.848 kb on + strandat 1009.872 kb on - strandat 1009.926 kb on - strandat 1009.985 kb on + strand, within HP15_1000at 1010.119 kb on + strand, within HP15_1000at 1010.179 kb on - strand, within HP15_1000at 1010.361 kb on + strand, within HP15_1000

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine as (N)
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1,008,931 - HP15_999 0.45 +0.7
1,008,938 - HP15_999 0.46 +0.1
1,008,981 + HP15_999 0.48 +0.7
1,008,989 - HP15_999 0.49 -1.3
1,009,038 + HP15_999 0.52 -0.1
1,009,070 + HP15_999 0.54 -0.0
1,009,097 - HP15_999 0.55 +0.9
1,009,120 - HP15_999 0.57 -0.5
1,009,211 - HP15_999 0.62 -0.2
1,009,211 - HP15_999 0.62 -0.3
1,009,216 - HP15_999 0.63 +0.2
1,009,240 + HP15_999 0.64 +0.1
1,009,411 + HP15_999 0.74 -0.3
1,009,419 - HP15_999 0.75 +0.2
1,009,419 - HP15_999 0.75 -0.3
1,009,499 - HP15_999 0.80 +0.9
1,009,563 - HP15_999 0.84 -0.3
1,009,686 + -0.0
1,009,755 + -0.0
1,009,755 + -0.5
1,009,848 + +0.2
1,009,872 - -0.8
1,009,926 - +0.3
1,009,985 + HP15_1000 0.10 -0.9
1,010,119 + HP15_1000 0.33 -0.2
1,010,179 - HP15_1000 0.44 -0.4
1,010,361 + HP15_1000 0.75 -0.6

Or see this region's nucleotide sequence