Strain Fitness in Dechlorosoma suillum PS around Dsui_2336

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2334 and Dsui_2335 are separated by 29 nucleotidesDsui_2335 and Dsui_2336 overlap by 4 nucleotidesDsui_2336 and Dsui_2337 are separated by 383 nucleotidesDsui_2337 and Dsui_2339 are separated by 254 nucleotides Dsui_2334: Dsui_2334 - tRNA-dihydrouridine synthase, at 2,487,712 to 2,488,674 _2334 Dsui_2335: Dsui_2335 - Integral membrane protein CcmA involved in cell shape determination, at 2,488,704 to 2,489,153 _2335 Dsui_2336: Dsui_2336 - hypothetical protein, at 2,489,150 to 2,489,743 _2336 Dsui_2337: Dsui_2337 - putative Fe-S oxidoreductase, at 2,490,127 to 2,490,468 _2337 Dsui_2339: Dsui_2339 - putative domain HDIG-containing protein, at 2,490,723 to 2,491,634 _2339 Position (kb) 2489 2490Strain fitness (log2 ratio) -1 0 1 2at 2488.260 kb on + strand, within Dsui_2334at 2488.362 kb on - strand, within Dsui_2334at 2488.461 kb on + strand, within Dsui_2334at 2488.521 kb on - strand, within Dsui_2334at 2488.539 kb on + strand, within Dsui_2334at 2488.606 kb on + strandat 2488.730 kb on + strandat 2488.742 kb on - strandat 2488.752 kb on - strand, within Dsui_2335at 2488.849 kb on + strandat 2488.849 kb on + strand, within Dsui_2335at 2488.849 kb on + strand, within Dsui_2335at 2488.857 kb on - strand, within Dsui_2335at 2488.857 kb on - strand, within Dsui_2335at 2488.857 kb on - strand, within Dsui_2335at 2488.914 kb on + strand, within Dsui_2335at 2488.915 kb on + strandat 2489.033 kb on + strand, within Dsui_2335at 2489.061 kb on + strand, within Dsui_2335at 2489.067 kb on - strand, within Dsui_2335at 2489.077 kb on - strand, within Dsui_2335at 2489.094 kb on + strand, within Dsui_2335at 2489.102 kb on - strand, within Dsui_2335at 2489.130 kb on + strandat 2489.230 kb on + strand, within Dsui_2336at 2489.238 kb on - strand, within Dsui_2336at 2489.238 kb on - strand, within Dsui_2336at 2489.238 kb on - strand, within Dsui_2336at 2489.280 kb on - strand, within Dsui_2336at 2489.285 kb on - strand, within Dsui_2336at 2489.411 kb on - strand, within Dsui_2336at 2489.443 kb on - strand, within Dsui_2336at 2489.469 kb on - strand, within Dsui_2336at 2489.469 kb on - strand, within Dsui_2336at 2489.469 kb on - strand, within Dsui_2336at 2489.469 kb on - strand, within Dsui_2336at 2489.554 kb on + strand, within Dsui_2336at 2489.648 kb on + strand, within Dsui_2336at 2489.711 kb on - strandat 2489.805 kb on - strandat 2489.859 kb on + strandat 2489.986 kb on + strandat 2490.040 kb on + strandat 2490.087 kb on + strandat 2490.523 kb on + strandat 2490.523 kb on + strandat 2490.613 kb on + strandat 2490.674 kb on + strandat 2490.692 kb on + strandat 2490.743 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,488,260 + Dsui_2334 0.57 -1.0
2,488,362 - Dsui_2334 0.67 -0.7
2,488,461 + Dsui_2334 0.78 -0.2
2,488,521 - Dsui_2334 0.84 -0.9
2,488,539 + Dsui_2334 0.86 +1.3
2,488,606 + -0.1
2,488,730 + +0.6
2,488,742 - +0.5
2,488,752 - Dsui_2335 0.11 +0.1
2,488,849 + +2.2
2,488,849 + Dsui_2335 0.32 -0.4
2,488,849 + Dsui_2335 0.32 +0.8
2,488,857 - Dsui_2335 0.34 -0.5
2,488,857 - Dsui_2335 0.34 +0.6
2,488,857 - Dsui_2335 0.34 +0.2
2,488,914 + Dsui_2335 0.47 +0.6
2,488,915 + +2.2
2,489,033 + Dsui_2335 0.73 +0.8
2,489,061 + Dsui_2335 0.79 +2.2
2,489,067 - Dsui_2335 0.81 +1.9
2,489,077 - Dsui_2335 0.83 +0.6
2,489,094 + Dsui_2335 0.87 +0.0
2,489,102 - Dsui_2335 0.88 -0.8
2,489,130 + +2.2
2,489,230 + Dsui_2336 0.13 +0.3
2,489,238 - Dsui_2336 0.15 -0.2
2,489,238 - Dsui_2336 0.15 +0.8
2,489,238 - Dsui_2336 0.15 +1.5
2,489,280 - Dsui_2336 0.22 +1.1
2,489,285 - Dsui_2336 0.23 -0.7
2,489,411 - Dsui_2336 0.44 +0.1
2,489,443 - Dsui_2336 0.49 +0.1
2,489,469 - Dsui_2336 0.54 -0.2
2,489,469 - Dsui_2336 0.54 -0.1
2,489,469 - Dsui_2336 0.54 +0.8
2,489,469 - Dsui_2336 0.54 -0.2
2,489,554 + Dsui_2336 0.68 +0.1
2,489,648 + Dsui_2336 0.84 +0.6
2,489,711 - +0.2
2,489,805 - +0.2
2,489,859 + +1.2
2,489,986 + -0.1
2,490,040 + +0.6
2,490,087 + -0.5
2,490,523 + -0.0
2,490,523 + +0.2
2,490,613 + -0.1
2,490,674 + +0.4
2,490,692 + -0.4
2,490,743 - -0.1

Or see this region's nucleotide sequence