Strain Fitness in Dechlorosoma suillum PS around Dsui_2334

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2332 and Dsui_2333 are separated by 10 nucleotidesDsui_2333 and Dsui_2334 are separated by 151 nucleotidesDsui_2334 and Dsui_2335 are separated by 29 nucleotidesDsui_2335 and Dsui_2336 overlap by 4 nucleotides Dsui_2332: Dsui_2332 - uracil-xanthine permease, at 2,485,682 to 2,486,923 _2332 Dsui_2333: Dsui_2333 - uracil phosphoribosyltransferase, at 2,486,934 to 2,487,560 _2333 Dsui_2334: Dsui_2334 - tRNA-dihydrouridine synthase, at 2,487,712 to 2,488,674 _2334 Dsui_2335: Dsui_2335 - Integral membrane protein CcmA involved in cell shape determination, at 2,488,704 to 2,489,153 _2335 Dsui_2336: Dsui_2336 - hypothetical protein, at 2,489,150 to 2,489,743 _2336 Position (kb) 2487 2488 2489Strain fitness (log2 ratio) -1 0 1 2at 2486.801 kb on - strandat 2486.803 kb on + strandat 2486.811 kb on - strandat 2486.903 kb on - strandat 2486.908 kb on - strandat 2486.975 kb on - strandat 2486.983 kb on + strandat 2486.983 kb on + strandat 2486.983 kb on + strandat 2486.991 kb on - strandat 2486.991 kb on - strandat 2487.076 kb on - strand, within Dsui_2333at 2487.112 kb on + strandat 2487.197 kb on + strand, within Dsui_2333at 2487.229 kb on + strandat 2487.248 kb on - strand, within Dsui_2333at 2487.259 kb on + strandat 2487.450 kb on - strand, within Dsui_2333at 2487.620 kb on - strandat 2487.749 kb on - strandat 2488.015 kb on + strand, within Dsui_2334at 2488.040 kb on + strand, within Dsui_2334at 2488.040 kb on + strand, within Dsui_2334at 2488.076 kb on - strand, within Dsui_2334at 2488.124 kb on + strand, within Dsui_2334at 2488.260 kb on + strand, within Dsui_2334at 2488.362 kb on - strand, within Dsui_2334at 2488.461 kb on + strand, within Dsui_2334at 2488.521 kb on - strand, within Dsui_2334at 2488.539 kb on + strand, within Dsui_2334at 2488.606 kb on + strandat 2488.730 kb on + strandat 2488.742 kb on - strandat 2488.752 kb on - strand, within Dsui_2335at 2488.849 kb on + strandat 2488.849 kb on + strand, within Dsui_2335at 2488.849 kb on + strand, within Dsui_2335at 2488.857 kb on - strand, within Dsui_2335at 2488.857 kb on - strand, within Dsui_2335at 2488.857 kb on - strand, within Dsui_2335at 2488.914 kb on + strand, within Dsui_2335at 2488.915 kb on + strandat 2489.033 kb on + strand, within Dsui_2335at 2489.061 kb on + strand, within Dsui_2335at 2489.067 kb on - strand, within Dsui_2335at 2489.077 kb on - strand, within Dsui_2335at 2489.094 kb on + strand, within Dsui_2335at 2489.102 kb on - strand, within Dsui_2335at 2489.130 kb on + strandat 2489.230 kb on + strand, within Dsui_2336at 2489.238 kb on - strand, within Dsui_2336at 2489.238 kb on - strand, within Dsui_2336at 2489.238 kb on - strand, within Dsui_2336at 2489.280 kb on - strand, within Dsui_2336at 2489.285 kb on - strand, within Dsui_2336at 2489.411 kb on - strand, within Dsui_2336at 2489.443 kb on - strand, within Dsui_2336at 2489.469 kb on - strand, within Dsui_2336at 2489.469 kb on - strand, within Dsui_2336at 2489.469 kb on - strand, within Dsui_2336at 2489.469 kb on - strand, within Dsui_2336at 2489.554 kb on + strand, within Dsui_2336at 2489.648 kb on + strand, within Dsui_2336

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,486,801 - +0.6
2,486,803 + +1.2
2,486,811 - -0.3
2,486,903 - +0.4
2,486,908 - +0.3
2,486,975 - +0.0
2,486,983 + +0.6
2,486,983 + +0.4
2,486,983 + +1.2
2,486,991 - +0.2
2,486,991 - +0.6
2,487,076 - Dsui_2333 0.23 +0.0
2,487,112 + +1.6
2,487,197 + Dsui_2333 0.42 -0.1
2,487,229 + +1.6
2,487,248 - Dsui_2333 0.50 +0.9
2,487,259 + +0.2
2,487,450 - Dsui_2333 0.82 +0.4
2,487,620 - +0.2
2,487,749 - +0.6
2,488,015 + Dsui_2334 0.31 -1.6
2,488,040 + Dsui_2334 0.34 +1.9
2,488,040 + Dsui_2334 0.34 -0.1
2,488,076 - Dsui_2334 0.38 -0.1
2,488,124 + Dsui_2334 0.43 +0.4
2,488,260 + Dsui_2334 0.57 -1.0
2,488,362 - Dsui_2334 0.67 -0.7
2,488,461 + Dsui_2334 0.78 -0.2
2,488,521 - Dsui_2334 0.84 -0.9
2,488,539 + Dsui_2334 0.86 +1.3
2,488,606 + -0.1
2,488,730 + +0.6
2,488,742 - +0.5
2,488,752 - Dsui_2335 0.11 +0.1
2,488,849 + +2.2
2,488,849 + Dsui_2335 0.32 -0.4
2,488,849 + Dsui_2335 0.32 +0.8
2,488,857 - Dsui_2335 0.34 -0.5
2,488,857 - Dsui_2335 0.34 +0.6
2,488,857 - Dsui_2335 0.34 +0.2
2,488,914 + Dsui_2335 0.47 +0.6
2,488,915 + +2.2
2,489,033 + Dsui_2335 0.73 +0.8
2,489,061 + Dsui_2335 0.79 +2.2
2,489,067 - Dsui_2335 0.81 +1.9
2,489,077 - Dsui_2335 0.83 +0.6
2,489,094 + Dsui_2335 0.87 +0.0
2,489,102 - Dsui_2335 0.88 -0.8
2,489,130 + +2.2
2,489,230 + Dsui_2336 0.13 +0.3
2,489,238 - Dsui_2336 0.15 -0.2
2,489,238 - Dsui_2336 0.15 +0.8
2,489,238 - Dsui_2336 0.15 +1.5
2,489,280 - Dsui_2336 0.22 +1.1
2,489,285 - Dsui_2336 0.23 -0.7
2,489,411 - Dsui_2336 0.44 +0.1
2,489,443 - Dsui_2336 0.49 +0.1
2,489,469 - Dsui_2336 0.54 -0.2
2,489,469 - Dsui_2336 0.54 -0.1
2,489,469 - Dsui_2336 0.54 +0.8
2,489,469 - Dsui_2336 0.54 -0.2
2,489,554 + Dsui_2336 0.68 +0.1
2,489,648 + Dsui_2336 0.84 +0.6

Or see this region's nucleotide sequence