Strain Fitness in Dechlorosoma suillum PS around Dsui_2310

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2309 and Dsui_2310 are separated by 37 nucleotidesDsui_2310 and Dsui_2311 are separated by 40 nucleotidesDsui_2311 and Dsui_2312 are separated by 207 nucleotides Dsui_2309: Dsui_2309 - selenium donor protein, at 2,464,841 to 2,465,887 _2309 Dsui_2310: Dsui_2310 - tRNA 2-selenouridine synthase, at 2,465,925 to 2,467,013 _2310 Dsui_2311: Dsui_2311 - isochorismate hydrolase, at 2,467,054 to 2,467,596 _2311 Dsui_2312: Dsui_2312 - 3-hydroxybutyrate dehydrogenase, at 2,467,804 to 2,468,586 _2312 Position (kb) 2465 2466 2467 2468Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2464.970 kb on - strand, within Dsui_2309at 2465.003 kb on - strand, within Dsui_2309at 2465.167 kb on - strand, within Dsui_2309at 2465.327 kb on - strand, within Dsui_2309at 2465.331 kb on - strand, within Dsui_2309at 2465.358 kb on + strand, within Dsui_2309at 2465.366 kb on - strand, within Dsui_2309at 2465.394 kb on - strand, within Dsui_2309at 2465.437 kb on - strand, within Dsui_2309at 2465.466 kb on + strand, within Dsui_2309at 2465.726 kb on - strand, within Dsui_2309at 2465.807 kb on + strandat 2465.913 kb on - strandat 2466.148 kb on - strandat 2466.156 kb on + strand, within Dsui_2310at 2466.166 kb on + strand, within Dsui_2310at 2466.319 kb on + strand, within Dsui_2310at 2466.343 kb on + strand, within Dsui_2310at 2466.389 kb on + strand, within Dsui_2310at 2466.528 kb on + strand, within Dsui_2310at 2466.647 kb on + strand, within Dsui_2310at 2466.673 kb on + strand, within Dsui_2310at 2466.827 kb on - strand, within Dsui_2310at 2466.852 kb on + strand, within Dsui_2310at 2466.917 kb on + strandat 2466.946 kb on + strandat 2467.049 kb on + strandat 2467.059 kb on + strandat 2467.064 kb on + strandat 2467.128 kb on + strand, within Dsui_2311at 2467.131 kb on - strandat 2467.169 kb on - strand, within Dsui_2311at 2467.398 kb on - strandat 2467.553 kb on + strandat 2467.563 kb on + strandat 2467.571 kb on - strandat 2467.787 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,464,970 - Dsui_2309 0.12 -0.1
2,465,003 - Dsui_2309 0.15 -0.1
2,465,167 - Dsui_2309 0.31 -1.7
2,465,327 - Dsui_2309 0.46 -1.2
2,465,331 - Dsui_2309 0.47 -0.7
2,465,358 + Dsui_2309 0.49 -0.7
2,465,366 - Dsui_2309 0.50 -0.6
2,465,394 - Dsui_2309 0.53 -0.9
2,465,437 - Dsui_2309 0.57 -0.5
2,465,466 + Dsui_2309 0.60 -1.0
2,465,726 - Dsui_2309 0.85 -0.9
2,465,807 + -0.2
2,465,913 - +0.2
2,466,148 - +1.2
2,466,156 + Dsui_2310 0.21 -0.6
2,466,166 + Dsui_2310 0.22 +0.6
2,466,319 + Dsui_2310 0.36 -1.8
2,466,343 + Dsui_2310 0.38 -1.7
2,466,389 + Dsui_2310 0.43 -0.3
2,466,528 + Dsui_2310 0.55 -0.9
2,466,647 + Dsui_2310 0.66 -0.8
2,466,673 + Dsui_2310 0.69 -0.8
2,466,827 - Dsui_2310 0.83 +1.0
2,466,852 + Dsui_2310 0.85 +0.2
2,466,917 + +0.1
2,466,946 + +0.1
2,467,049 + -0.4
2,467,059 + -1.2
2,467,064 + +0.2
2,467,128 + Dsui_2311 0.14 -0.3
2,467,131 - +2.8
2,467,169 - Dsui_2311 0.21 -0.4
2,467,398 - +1.2
2,467,553 + -2.0
2,467,563 + -0.8
2,467,571 - +0.6
2,467,787 + -0.4

Or see this region's nucleotide sequence