Strain Fitness in Dechlorosoma suillum PS around Dsui_2172

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2170 and Dsui_2171 overlap by 4 nucleotidesDsui_2171 and Dsui_2172 are separated by 37 nucleotidesDsui_2172 and Dsui_2173 are separated by 172 nucleotidesDsui_2173 and Dsui_2174 are separated by 203 nucleotides Dsui_2170: Dsui_2170 - putative iron-regulated membrane protein, at 2,306,569 to 2,308,077 _2170 Dsui_2171: Dsui_2171 - Protein of unknown function (DUF3325), at 2,308,074 to 2,308,430 _2171 Dsui_2172: Dsui_2172 - transcriptional regulator, at 2,308,468 to 2,308,944 _2172 Dsui_2173: Dsui_2173 - peroxiredoxin, Ohr subfamily, at 2,309,117 to 2,309,542 _2173 Dsui_2174: Dsui_2174 - putative signal transduction protein, at 2,309,746 to 2,310,600 _2174 Position (kb) 2308 2309Strain fitness (log2 ratio) -1 0 1 2 3at 2307.470 kb on + strandat 2307.470 kb on + strandat 2307.470 kb on + strandat 2307.532 kb on + strandat 2307.594 kb on + strandat 2307.891 kb on + strand, within Dsui_2170at 2308.009 kb on + strandat 2308.017 kb on - strandat 2308.113 kb on - strandat 2308.129 kb on + strand, within Dsui_2171at 2308.135 kb on + strandat 2308.392 kb on + strandat 2308.409 kb on - strandat 2308.594 kb on + strand, within Dsui_2172at 2308.594 kb on + strand, within Dsui_2172at 2308.849 kb on + strand, within Dsui_2172at 2308.957 kb on + strandat 2308.970 kb on + strandat 2309.060 kb on + strandat 2309.060 kb on + strandat 2309.078 kb on - strandat 2309.157 kb on - strandat 2309.199 kb on + strand, within Dsui_2173at 2309.329 kb on + strand, within Dsui_2173at 2309.356 kb on - strandat 2309.361 kb on - strandat 2309.536 kb on + strandat 2309.589 kb on + strandat 2309.627 kb on - strandat 2309.770 kb on - strandat 2309.781 kb on - strandat 2309.866 kb on + strandat 2309.866 kb on + strandat 2309.874 kb on - strand, within Dsui_2174at 2309.874 kb on - strand, within Dsui_2174at 2309.879 kb on - strand, within Dsui_2174at 2309.896 kb on + strand, within Dsui_2174at 2309.904 kb on - strand, within Dsui_2174at 2309.908 kb on + strand, within Dsui_2174

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,307,470 + +0.2
2,307,470 + +0.6
2,307,470 + +1.2
2,307,532 + +1.6
2,307,594 + +1.2
2,307,891 + Dsui_2170 0.88 -0.0
2,308,009 + +0.6
2,308,017 - +2.2
2,308,113 - +2.2
2,308,129 + Dsui_2171 0.15 -1.4
2,308,135 + +2.2
2,308,392 + +1.2
2,308,409 - +2.2
2,308,594 + Dsui_2172 0.26 +2.8
2,308,594 + Dsui_2172 0.26 +2.2
2,308,849 + Dsui_2172 0.80 +0.6
2,308,957 + -0.0
2,308,970 + -1.1
2,309,060 + -0.9
2,309,060 + +2.2
2,309,078 - +2.2
2,309,157 - +1.2
2,309,199 + Dsui_2173 0.19 -0.9
2,309,329 + Dsui_2173 0.50 -0.6
2,309,356 - -0.1
2,309,361 - +0.6
2,309,536 + -1.6
2,309,589 + -0.4
2,309,627 - +0.2
2,309,770 - -0.6
2,309,781 - +0.4
2,309,866 + +0.6
2,309,866 + +1.2
2,309,874 - Dsui_2174 0.15 +0.2
2,309,874 - Dsui_2174 0.15 -1.3
2,309,879 - Dsui_2174 0.16 -0.6
2,309,896 + Dsui_2174 0.18 -0.4
2,309,904 - Dsui_2174 0.18 +0.1
2,309,908 + Dsui_2174 0.19 -0.9

Or see this region's nucleotide sequence