Strain Fitness in Dechlorosoma suillum PS around Dsui_2092

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2090 and Dsui_2091 overlap by 4 nucleotidesDsui_2091 and Dsui_2092 overlap by 37 nucleotidesDsui_2092 and Dsui_2093 are separated by 130 nucleotides Dsui_2090: Dsui_2090 - transcriptional regulator, at 2,212,310 to 2,213,251 _2090 Dsui_2091: Dsui_2091 - hypothetical protein, at 2,213,248 to 2,213,385 _2091 Dsui_2092: Dsui_2092 - hypothetical protein, at 2,213,349 to 2,214,350 _2092 Dsui_2093: Dsui_2093 - hypothetical protein, at 2,214,481 to 2,215,341 _2093 Position (kb) 2213 2214 2215Strain fitness (log2 ratio) -1 0 1 2 3at 2212.362 kb on + strandat 2212.394 kb on + strandat 2212.571 kb on + strand, within Dsui_2090at 2212.589 kb on - strand, within Dsui_2090at 2212.628 kb on + strand, within Dsui_2090at 2212.684 kb on + strand, within Dsui_2090at 2212.887 kb on + strand, within Dsui_2090at 2212.932 kb on - strandat 2213.380 kb on - strandat 2213.456 kb on - strand, within Dsui_2092at 2213.470 kb on + strand, within Dsui_2092at 2213.579 kb on + strandat 2213.712 kb on - strandat 2213.727 kb on - strandat 2214.073 kb on + strandat 2214.484 kb on + strandat 2214.558 kb on - strandat 2214.735 kb on - strand, within Dsui_2093at 2214.763 kb on - strand, within Dsui_2093at 2214.837 kb on - strand, within Dsui_2093at 2215.095 kb on + strand, within Dsui_2093at 2215.137 kb on + strand, within Dsui_2093at 2215.278 kb on + strandat 2215.296 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,212,362 + -0.4
2,212,394 + -0.5
2,212,571 + Dsui_2090 0.28 -1.2
2,212,589 - Dsui_2090 0.30 +0.3
2,212,628 + Dsui_2090 0.34 -1.1
2,212,684 + Dsui_2090 0.40 -0.1
2,212,887 + Dsui_2090 0.61 -0.6
2,212,932 - +0.2
2,213,380 - +1.2
2,213,456 - Dsui_2092 0.11 -0.9
2,213,470 + Dsui_2092 0.12 +1.3
2,213,579 + +1.2
2,213,712 - -0.4
2,213,727 - +2.2
2,214,073 + +3.2
2,214,484 + +2.2
2,214,558 - +1.2
2,214,735 - Dsui_2093 0.30 +0.4
2,214,763 - Dsui_2093 0.33 -0.6
2,214,837 - Dsui_2093 0.41 +1.8
2,215,095 + Dsui_2093 0.71 +0.8
2,215,137 + Dsui_2093 0.76 -1.2
2,215,278 + -0.9
2,215,296 + -1.0

Or see this region's nucleotide sequence