Strain Fitness in Dechlorosoma suillum PS around Dsui_2088

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2086 and Dsui_2087 are separated by 202 nucleotidesDsui_2087 and Dsui_2088 are separated by 36 nucleotidesDsui_2088 and Dsui_2089 are separated by 102 nucleotidesDsui_2089 and Dsui_2090 are separated by 133 nucleotides Dsui_2086: Dsui_2086 - cytochrome c, at 2,207,301 to 2,209,391 _2086 Dsui_2087: Dsui_2087 - cytochrome c553, at 2,209,594 to 2,210,328 _2087 Dsui_2088: Dsui_2088 - cytochrome c, at 2,210,365 to 2,211,318 _2088 Dsui_2089: Dsui_2089 - dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein, at 2,211,421 to 2,212,176 _2089 Dsui_2090: Dsui_2090 - transcriptional regulator, at 2,212,310 to 2,213,251 _2090 Position (kb) 2210 2211 2212Strain fitness (log2 ratio) -1 0 1 2 3at 2209.592 kb on - strandat 2209.722 kb on - strandat 2209.908 kb on + strandat 2209.908 kb on + strandat 2209.908 kb on + strandat 2209.959 kb on + strandat 2210.143 kb on + strand, within Dsui_2087at 2210.225 kb on + strandat 2210.247 kb on + strand, within Dsui_2087at 2210.255 kb on - strandat 2210.454 kb on + strandat 2210.697 kb on + strand, within Dsui_2088at 2210.761 kb on - strand, within Dsui_2088at 2210.922 kb on - strand, within Dsui_2088at 2211.017 kb on - strand, within Dsui_2088at 2211.129 kb on + strand, within Dsui_2088at 2211.275 kb on + strandat 2211.364 kb on - strandat 2211.364 kb on - strandat 2211.393 kb on + strandat 2211.532 kb on + strandat 2211.764 kb on - strandat 2211.825 kb on + strandat 2212.184 kb on - strandat 2212.185 kb on + strandat 2212.308 kb on + strandat 2212.308 kb on + strandat 2212.308 kb on + strandat 2212.318 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,209,592 - -0.1
2,209,722 - +0.6
2,209,908 + +0.2
2,209,908 + +1.6
2,209,908 + +2.8
2,209,959 + -0.4
2,210,143 + Dsui_2087 0.75 -0.1
2,210,225 + +0.2
2,210,247 + Dsui_2087 0.89 -0.3
2,210,255 - -0.1
2,210,454 + -0.8
2,210,697 + Dsui_2088 0.35 +0.2
2,210,761 - Dsui_2088 0.42 +1.5
2,210,922 - Dsui_2088 0.58 +1.2
2,211,017 - Dsui_2088 0.68 +0.9
2,211,129 + Dsui_2088 0.80 +0.4
2,211,275 + +2.2
2,211,364 - +2.2
2,211,364 - +1.2
2,211,393 + +1.2
2,211,532 + +0.2
2,211,764 - +0.4
2,211,825 + -0.1
2,212,184 - +0.6
2,212,185 + -0.1
2,212,308 + +0.4
2,212,308 + +0.6
2,212,308 + -0.4
2,212,318 + -0.8

Or see this region's nucleotide sequence