Experiment: defined media with 30 mM sodium lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2086 and Dsui_2087 are separated by 202 nucleotides Dsui_2087 and Dsui_2088 are separated by 36 nucleotides Dsui_2088 and Dsui_2089 are separated by 102 nucleotides Dsui_2089 and Dsui_2090 are separated by 133 nucleotides
Dsui_2086: Dsui_2086 - cytochrome c, at 2,207,301 to 2,209,391
_2086
Dsui_2087: Dsui_2087 - cytochrome c553, at 2,209,594 to 2,210,328
_2087
Dsui_2088: Dsui_2088 - cytochrome c, at 2,210,365 to 2,211,318
_2088
Dsui_2089: Dsui_2089 - dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein, at 2,211,421 to 2,212,176
_2089
Dsui_2090: Dsui_2090 - transcriptional regulator, at 2,212,310 to 2,213,251
_2090
Position (kb)
2210
2211
2212 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2209.592 kb on - strand at 2209.722 kb on - strand at 2209.908 kb on + strand at 2209.908 kb on + strand at 2209.908 kb on + strand at 2209.959 kb on + strand at 2210.143 kb on + strand, within Dsui_2087 at 2210.225 kb on + strand at 2210.247 kb on + strand, within Dsui_2087 at 2210.255 kb on - strand at 2210.454 kb on + strand at 2210.697 kb on + strand, within Dsui_2088 at 2210.761 kb on - strand, within Dsui_2088 at 2210.922 kb on - strand, within Dsui_2088 at 2211.017 kb on - strand, within Dsui_2088 at 2211.129 kb on + strand, within Dsui_2088 at 2211.275 kb on + strand at 2211.364 kb on - strand at 2211.364 kb on - strand at 2211.393 kb on + strand at 2211.532 kb on + strand at 2211.764 kb on - strand at 2211.825 kb on + strand at 2212.184 kb on - strand at 2212.185 kb on + strand at 2212.308 kb on + strand at 2212.308 kb on + strand at 2212.308 kb on + strand at 2212.318 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate remove 2,209,592 - -0.1 2,209,722 - +0.6 2,209,908 + +0.2 2,209,908 + +1.6 2,209,908 + +2.8 2,209,959 + -0.4 2,210,143 + Dsui_2087 0.75 -0.1 2,210,225 + +0.2 2,210,247 + Dsui_2087 0.89 -0.3 2,210,255 - -0.1 2,210,454 + -0.8 2,210,697 + Dsui_2088 0.35 +0.2 2,210,761 - Dsui_2088 0.42 +1.5 2,210,922 - Dsui_2088 0.58 +1.2 2,211,017 - Dsui_2088 0.68 +0.9 2,211,129 + Dsui_2088 0.80 +0.4 2,211,275 + +2.2 2,211,364 - +2.2 2,211,364 - +1.2 2,211,393 + +1.2 2,211,532 + +0.2 2,211,764 - +0.4 2,211,825 + -0.1 2,212,184 - +0.6 2,212,185 + -0.1 2,212,308 + +0.4 2,212,308 + +0.6 2,212,308 + -0.4 2,212,318 + -0.8
Or see this region's nucleotide sequence