Strain Fitness in Dechlorosoma suillum PS around Dsui_1911

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1908 and Dsui_1910 are separated by 362 nucleotidesDsui_1910 and Dsui_1911 are separated by 134 nucleotidesDsui_1911 and Dsui_1912 are separated by 159 nucleotidesDsui_1912 and Dsui_1913 are separated by 1 nucleotides Dsui_1908: Dsui_1908 - putative Fe-S-cluster redox enzyme, at 2,011,340 to 2,012,671 _1908 Dsui_1910: Dsui_1910 - hypothetical protein, at 2,013,034 to 2,013,381 _1910 Dsui_1911: Dsui_1911 - ParB-like partition protein, at 2,013,516 to 2,014,454 _1911 Dsui_1912: Dsui_1912 - response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain protein, at 2,014,614 to 2,015,177 _1912 Dsui_1913: Dsui_1913 - signal transduction histidine kinase, at 2,015,179 to 2,016,441 _1913 Position (kb) 2013 2014 2015Strain fitness (log2 ratio) -1 0 1 2 3at 2012.519 kb on + strand, within Dsui_1908at 2012.704 kb on - strandat 2012.704 kb on - strandat 2012.724 kb on + strandat 2012.724 kb on + strandat 2013.264 kb on + strand, within Dsui_1910at 2013.406 kb on - strandat 2013.443 kb on + strandat 2013.615 kb on - strand, within Dsui_1911at 2013.807 kb on + strandat 2013.862 kb on + strand, within Dsui_1911at 2014.025 kb on - strand, within Dsui_1911at 2014.025 kb on - strand, within Dsui_1911at 2014.100 kb on - strand, within Dsui_1911at 2014.140 kb on + strandat 2014.208 kb on - strand, within Dsui_1911at 2014.342 kb on + strandat 2014.396 kb on + strandat 2014.399 kb on - strandat 2014.409 kb on - strandat 2014.472 kb on - strandat 2014.507 kb on - strandat 2014.564 kb on - strandat 2014.833 kb on - strandat 2014.945 kb on + strandat 2015.068 kb on - strand, within Dsui_1912at 2015.171 kb on - strandat 2015.260 kb on + strandat 2015.430 kb on + strandat 2015.450 kb on + strand, within Dsui_1913

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,012,519 + Dsui_1908 0.89 +0.4
2,012,704 - +0.2
2,012,704 - +0.2
2,012,724 + +1.7
2,012,724 + +0.2
2,013,264 + Dsui_1910 0.66 +1.2
2,013,406 - +1.5
2,013,443 + -0.7
2,013,615 - Dsui_1911 0.11 +1.1
2,013,807 + +0.6
2,013,862 + Dsui_1911 0.37 -1.0
2,014,025 - Dsui_1911 0.54 +0.1
2,014,025 - Dsui_1911 0.54 +0.5
2,014,100 - Dsui_1911 0.62 -0.1
2,014,140 + +1.2
2,014,208 - Dsui_1911 0.74 +0.2
2,014,342 + +3.2
2,014,396 + +0.4
2,014,399 - +0.2
2,014,409 - +0.5
2,014,472 - +0.2
2,014,507 - +1.5
2,014,564 - +1.0
2,014,833 - +2.8
2,014,945 + +1.2
2,015,068 - Dsui_1912 0.80 +0.6
2,015,171 - +1.5
2,015,260 + +0.0
2,015,430 + +0.2
2,015,450 + Dsui_1913 0.21 +0.0

Or see this region's nucleotide sequence