Experiment: defined media with 30 mM sodium lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1785 and Dsui_1786 overlap by 4 nucleotides Dsui_1786 and Dsui_1787 are separated by 46 nucleotides
Dsui_1785: Dsui_1785 - Tfp pilus assembly protein PilF, at 1,875,187 to 1,876,857
_1785
Dsui_1786: Dsui_1786 - tetratricopeptide repeat protein, at 1,876,854 to 1,878,557
_1786
Dsui_1787: Dsui_1787 - glycosyltransferase, at 1,878,604 to 1,887,414
_1787
Position (kb)
1876
1877
1878
1879 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1875.955 kb on + strand, within Dsui_1785 at 1875.963 kb on - strand, within Dsui_1785 at 1876.139 kb on - strand, within Dsui_1785 at 1876.226 kb on - strand, within Dsui_1785 at 1876.233 kb on + strand, within Dsui_1785 at 1876.253 kb on - strand, within Dsui_1785 at 1876.357 kb on - strand, within Dsui_1785 at 1876.361 kb on + strand at 1876.368 kb on - strand, within Dsui_1785 at 1876.390 kb on - strand, within Dsui_1785 at 1876.394 kb on - strand, within Dsui_1785 at 1876.394 kb on - strand, within Dsui_1785 at 1876.411 kb on + strand, within Dsui_1785 at 1876.434 kb on + strand, within Dsui_1785 at 1876.437 kb on - strand, within Dsui_1785 at 1876.442 kb on - strand, within Dsui_1785 at 1876.442 kb on - strand, within Dsui_1785 at 1876.442 kb on - strand, within Dsui_1785 at 1876.487 kb on + strand, within Dsui_1785 at 1876.495 kb on - strand, within Dsui_1785 at 1876.502 kb on + strand, within Dsui_1785 at 1876.557 kb on + strand, within Dsui_1785 at 1876.634 kb on - strand, within Dsui_1785 at 1876.807 kb on - strand at 1876.890 kb on + strand at 1876.935 kb on + strand at 1877.023 kb on + strand at 1877.023 kb on + strand at 1877.031 kb on - strand, within Dsui_1786 at 1877.036 kb on - strand, within Dsui_1786 at 1877.046 kb on - strand, within Dsui_1786 at 1877.162 kb on + strand, within Dsui_1786 at 1877.225 kb on + strand, within Dsui_1786 at 1877.233 kb on - strand, within Dsui_1786 at 1877.249 kb on + strand, within Dsui_1786 at 1877.257 kb on - strand, within Dsui_1786 at 1877.257 kb on - strand, within Dsui_1786 at 1877.257 kb on - strand, within Dsui_1786 at 1877.274 kb on - strand, within Dsui_1786 at 1877.319 kb on - strand, within Dsui_1786 at 1877.371 kb on + strand, within Dsui_1786 at 1877.517 kb on + strand, within Dsui_1786 at 1877.525 kb on - strand, within Dsui_1786 at 1877.525 kb on - strand, within Dsui_1786 at 1877.657 kb on + strand, within Dsui_1786 at 1877.765 kb on + strand, within Dsui_1786 at 1877.765 kb on + strand, within Dsui_1786 at 1877.765 kb on + strand, within Dsui_1786 at 1877.773 kb on - strand, within Dsui_1786 at 1877.773 kb on - strand, within Dsui_1786 at 1877.773 kb on - strand, within Dsui_1786 at 1877.827 kb on + strand, within Dsui_1786 at 1877.837 kb on + strand, within Dsui_1786 at 1877.845 kb on - strand, within Dsui_1786 at 1877.947 kb on - strand, within Dsui_1786 at 1877.996 kb on + strand, within Dsui_1786 at 1877.996 kb on + strand, within Dsui_1786 at 1878.004 kb on - strand, within Dsui_1786 at 1878.018 kb on + strand, within Dsui_1786 at 1878.069 kb on - strand, within Dsui_1786 at 1878.077 kb on + strand, within Dsui_1786 at 1878.077 kb on + strand at 1878.082 kb on + strand at 1878.082 kb on - strand, within Dsui_1786 at 1878.085 kb on - strand, within Dsui_1786 at 1878.085 kb on - strand, within Dsui_1786 at 1878.101 kb on - strand, within Dsui_1786 at 1878.140 kb on - strand, within Dsui_1786 at 1878.145 kb on + strand, within Dsui_1786 at 1878.150 kb on + strand, within Dsui_1786 at 1878.158 kb on - strand, within Dsui_1786 at 1878.249 kb on - strand, within Dsui_1786 at 1878.291 kb on + strand, within Dsui_1786 at 1878.344 kb on - strand, within Dsui_1786 at 1878.364 kb on - strand, within Dsui_1786 at 1878.425 kb on - strand at 1878.527 kb on + strand at 1878.627 kb on - strand at 1878.820 kb on + strand at 1878.901 kb on + strand at 1878.946 kb on + strand at 1878.948 kb on + strand at 1878.983 kb on + strand at 1879.147 kb on - strand at 1879.224 kb on + strand at 1879.291 kb on - strand at 1879.313 kb on + strand at 1879.443 kb on - strand at 1879.457 kb on - strand at 1879.459 kb on + strand at 1879.459 kb on + strand at 1879.467 kb on - strand at 1879.481 kb on - strand at 1879.519 kb on + strand, within Dsui_1787 at 1879.547 kb on - strand, within Dsui_1787
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate remove 1,875,955 + Dsui_1785 0.46 -1.0 1,875,963 - Dsui_1785 0.46 -0.3 1,876,139 - Dsui_1785 0.57 -0.2 1,876,226 - Dsui_1785 0.62 +0.1 1,876,233 + Dsui_1785 0.63 -1.1 1,876,253 - Dsui_1785 0.64 -1.3 1,876,357 - Dsui_1785 0.70 -0.5 1,876,361 + +2.1 1,876,368 - Dsui_1785 0.71 -0.4 1,876,390 - Dsui_1785 0.72 -0.2 1,876,394 - Dsui_1785 0.72 +0.3 1,876,394 - Dsui_1785 0.72 -0.5 1,876,411 + Dsui_1785 0.73 +0.4 1,876,434 + Dsui_1785 0.75 -1.0 1,876,437 - Dsui_1785 0.75 +0.2 1,876,442 - Dsui_1785 0.75 +0.4 1,876,442 - Dsui_1785 0.75 -0.4 1,876,442 - Dsui_1785 0.75 -0.5 1,876,487 + Dsui_1785 0.78 -1.0 1,876,495 - Dsui_1785 0.78 -0.8 1,876,502 + Dsui_1785 0.79 +0.1 1,876,557 + Dsui_1785 0.82 -0.2 1,876,634 - Dsui_1785 0.87 -0.2 1,876,807 - -0.6 1,876,890 + -0.7 1,876,935 + +1.4 1,877,023 + -0.9 1,877,023 + -0.9 1,877,031 - Dsui_1786 0.10 -0.3 1,877,036 - Dsui_1786 0.11 -0.6 1,877,046 - Dsui_1786 0.11 -0.3 1,877,162 + Dsui_1786 0.18 -1.5 1,877,225 + Dsui_1786 0.22 -0.6 1,877,233 - Dsui_1786 0.22 -0.5 1,877,249 + Dsui_1786 0.23 -2.1 1,877,257 - Dsui_1786 0.24 -0.5 1,877,257 - Dsui_1786 0.24 -0.8 1,877,257 - Dsui_1786 0.24 -0.5 1,877,274 - Dsui_1786 0.25 -0.3 1,877,319 - Dsui_1786 0.27 -0.1 1,877,371 + Dsui_1786 0.30 -0.9 1,877,517 + Dsui_1786 0.39 +0.7 1,877,525 - Dsui_1786 0.39 -1.5 1,877,525 - Dsui_1786 0.39 -0.2 1,877,657 + Dsui_1786 0.47 +0.3 1,877,765 + Dsui_1786 0.53 -1.6 1,877,765 + Dsui_1786 0.53 -0.5 1,877,765 + Dsui_1786 0.53 -1.0 1,877,773 - Dsui_1786 0.54 -0.2 1,877,773 - Dsui_1786 0.54 +0.0 1,877,773 - Dsui_1786 0.54 -0.0 1,877,827 + Dsui_1786 0.57 -0.6 1,877,837 + Dsui_1786 0.58 -0.9 1,877,845 - Dsui_1786 0.58 -0.7 1,877,947 - Dsui_1786 0.64 -1.4 1,877,996 + Dsui_1786 0.67 -0.4 1,877,996 + Dsui_1786 0.67 -0.1 1,878,004 - Dsui_1786 0.67 -0.7 1,878,018 + Dsui_1786 0.68 -0.5 1,878,069 - Dsui_1786 0.71 -0.7 1,878,077 + Dsui_1786 0.72 -1.2 1,878,077 + -0.2 1,878,082 + -0.4 1,878,082 - Dsui_1786 0.72 -0.3 1,878,085 - Dsui_1786 0.72 -0.7 1,878,085 - Dsui_1786 0.72 -0.3 1,878,101 - Dsui_1786 0.73 -0.6 1,878,140 - Dsui_1786 0.75 -1.2 1,878,145 + Dsui_1786 0.76 -0.3 1,878,150 + Dsui_1786 0.76 +0.1 1,878,158 - Dsui_1786 0.77 -1.2 1,878,249 - Dsui_1786 0.82 -0.4 1,878,291 + Dsui_1786 0.84 -0.6 1,878,344 - Dsui_1786 0.87 -0.4 1,878,364 - Dsui_1786 0.89 -0.0 1,878,425 - -1.4 1,878,527 + -1.1 1,878,627 - -0.3 1,878,820 + +1.6 1,878,901 + +0.1 1,878,946 + -0.2 1,878,948 + -0.4 1,878,983 + -0.5 1,879,147 - -0.5 1,879,224 + +0.3 1,879,291 - -0.9 1,879,313 + +0.1 1,879,443 - -0.7 1,879,457 - -1.0 1,879,459 + -0.2 1,879,459 + -1.4 1,879,467 - -0.4 1,879,481 - -0.5 1,879,519 + Dsui_1787 0.10 +0.0 1,879,547 - Dsui_1787 0.11 -0.8
Or see this region's nucleotide sequence