Strain Fitness in Dechlorosoma suillum PS around Dsui_1786

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1785 and Dsui_1786 overlap by 4 nucleotidesDsui_1786 and Dsui_1787 are separated by 46 nucleotides Dsui_1785: Dsui_1785 - Tfp pilus assembly protein PilF, at 1,875,187 to 1,876,857 _1785 Dsui_1786: Dsui_1786 - tetratricopeptide repeat protein, at 1,876,854 to 1,878,557 _1786 Dsui_1787: Dsui_1787 - glycosyltransferase, at 1,878,604 to 1,887,414 _1787 Position (kb) 1876 1877 1878 1879Strain fitness (log2 ratio) -2 -1 0 1 2at 1875.955 kb on + strand, within Dsui_1785at 1875.963 kb on - strand, within Dsui_1785at 1876.139 kb on - strand, within Dsui_1785at 1876.226 kb on - strand, within Dsui_1785at 1876.233 kb on + strand, within Dsui_1785at 1876.253 kb on - strand, within Dsui_1785at 1876.357 kb on - strand, within Dsui_1785at 1876.361 kb on + strandat 1876.368 kb on - strand, within Dsui_1785at 1876.390 kb on - strand, within Dsui_1785at 1876.394 kb on - strand, within Dsui_1785at 1876.394 kb on - strand, within Dsui_1785at 1876.411 kb on + strand, within Dsui_1785at 1876.434 kb on + strand, within Dsui_1785at 1876.437 kb on - strand, within Dsui_1785at 1876.442 kb on - strand, within Dsui_1785at 1876.442 kb on - strand, within Dsui_1785at 1876.442 kb on - strand, within Dsui_1785at 1876.487 kb on + strand, within Dsui_1785at 1876.495 kb on - strand, within Dsui_1785at 1876.502 kb on + strand, within Dsui_1785at 1876.557 kb on + strand, within Dsui_1785at 1876.634 kb on - strand, within Dsui_1785at 1876.807 kb on - strandat 1876.890 kb on + strandat 1876.935 kb on + strandat 1877.023 kb on + strandat 1877.023 kb on + strandat 1877.031 kb on - strand, within Dsui_1786at 1877.036 kb on - strand, within Dsui_1786at 1877.046 kb on - strand, within Dsui_1786at 1877.162 kb on + strand, within Dsui_1786at 1877.225 kb on + strand, within Dsui_1786at 1877.233 kb on - strand, within Dsui_1786at 1877.249 kb on + strand, within Dsui_1786at 1877.257 kb on - strand, within Dsui_1786at 1877.257 kb on - strand, within Dsui_1786at 1877.257 kb on - strand, within Dsui_1786at 1877.274 kb on - strand, within Dsui_1786at 1877.319 kb on - strand, within Dsui_1786at 1877.371 kb on + strand, within Dsui_1786at 1877.517 kb on + strand, within Dsui_1786at 1877.525 kb on - strand, within Dsui_1786at 1877.525 kb on - strand, within Dsui_1786at 1877.657 kb on + strand, within Dsui_1786at 1877.765 kb on + strand, within Dsui_1786at 1877.765 kb on + strand, within Dsui_1786at 1877.765 kb on + strand, within Dsui_1786at 1877.773 kb on - strand, within Dsui_1786at 1877.773 kb on - strand, within Dsui_1786at 1877.773 kb on - strand, within Dsui_1786at 1877.827 kb on + strand, within Dsui_1786at 1877.837 kb on + strand, within Dsui_1786at 1877.845 kb on - strand, within Dsui_1786at 1877.947 kb on - strand, within Dsui_1786at 1877.996 kb on + strand, within Dsui_1786at 1877.996 kb on + strand, within Dsui_1786at 1878.004 kb on - strand, within Dsui_1786at 1878.018 kb on + strand, within Dsui_1786at 1878.069 kb on - strand, within Dsui_1786at 1878.077 kb on + strand, within Dsui_1786at 1878.077 kb on + strandat 1878.082 kb on + strandat 1878.082 kb on - strand, within Dsui_1786at 1878.085 kb on - strand, within Dsui_1786at 1878.085 kb on - strand, within Dsui_1786at 1878.101 kb on - strand, within Dsui_1786at 1878.140 kb on - strand, within Dsui_1786at 1878.145 kb on + strand, within Dsui_1786at 1878.150 kb on + strand, within Dsui_1786at 1878.158 kb on - strand, within Dsui_1786at 1878.249 kb on - strand, within Dsui_1786at 1878.291 kb on + strand, within Dsui_1786at 1878.344 kb on - strand, within Dsui_1786at 1878.364 kb on - strand, within Dsui_1786at 1878.425 kb on - strandat 1878.527 kb on + strandat 1878.627 kb on - strandat 1878.820 kb on + strandat 1878.901 kb on + strandat 1878.946 kb on + strandat 1878.948 kb on + strandat 1878.983 kb on + strandat 1879.147 kb on - strandat 1879.224 kb on + strandat 1879.291 kb on - strandat 1879.313 kb on + strandat 1879.443 kb on - strandat 1879.457 kb on - strandat 1879.459 kb on + strandat 1879.459 kb on + strandat 1879.467 kb on - strandat 1879.481 kb on - strandat 1879.519 kb on + strand, within Dsui_1787at 1879.547 kb on - strand, within Dsui_1787

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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1,875,955 + Dsui_1785 0.46 -1.0
1,875,963 - Dsui_1785 0.46 -0.3
1,876,139 - Dsui_1785 0.57 -0.2
1,876,226 - Dsui_1785 0.62 +0.1
1,876,233 + Dsui_1785 0.63 -1.1
1,876,253 - Dsui_1785 0.64 -1.3
1,876,357 - Dsui_1785 0.70 -0.5
1,876,361 + +2.1
1,876,368 - Dsui_1785 0.71 -0.4
1,876,390 - Dsui_1785 0.72 -0.2
1,876,394 - Dsui_1785 0.72 +0.3
1,876,394 - Dsui_1785 0.72 -0.5
1,876,411 + Dsui_1785 0.73 +0.4
1,876,434 + Dsui_1785 0.75 -1.0
1,876,437 - Dsui_1785 0.75 +0.2
1,876,442 - Dsui_1785 0.75 +0.4
1,876,442 - Dsui_1785 0.75 -0.4
1,876,442 - Dsui_1785 0.75 -0.5
1,876,487 + Dsui_1785 0.78 -1.0
1,876,495 - Dsui_1785 0.78 -0.8
1,876,502 + Dsui_1785 0.79 +0.1
1,876,557 + Dsui_1785 0.82 -0.2
1,876,634 - Dsui_1785 0.87 -0.2
1,876,807 - -0.6
1,876,890 + -0.7
1,876,935 + +1.4
1,877,023 + -0.9
1,877,023 + -0.9
1,877,031 - Dsui_1786 0.10 -0.3
1,877,036 - Dsui_1786 0.11 -0.6
1,877,046 - Dsui_1786 0.11 -0.3
1,877,162 + Dsui_1786 0.18 -1.5
1,877,225 + Dsui_1786 0.22 -0.6
1,877,233 - Dsui_1786 0.22 -0.5
1,877,249 + Dsui_1786 0.23 -2.1
1,877,257 - Dsui_1786 0.24 -0.5
1,877,257 - Dsui_1786 0.24 -0.8
1,877,257 - Dsui_1786 0.24 -0.5
1,877,274 - Dsui_1786 0.25 -0.3
1,877,319 - Dsui_1786 0.27 -0.1
1,877,371 + Dsui_1786 0.30 -0.9
1,877,517 + Dsui_1786 0.39 +0.7
1,877,525 - Dsui_1786 0.39 -1.5
1,877,525 - Dsui_1786 0.39 -0.2
1,877,657 + Dsui_1786 0.47 +0.3
1,877,765 + Dsui_1786 0.53 -1.6
1,877,765 + Dsui_1786 0.53 -0.5
1,877,765 + Dsui_1786 0.53 -1.0
1,877,773 - Dsui_1786 0.54 -0.2
1,877,773 - Dsui_1786 0.54 +0.0
1,877,773 - Dsui_1786 0.54 -0.0
1,877,827 + Dsui_1786 0.57 -0.6
1,877,837 + Dsui_1786 0.58 -0.9
1,877,845 - Dsui_1786 0.58 -0.7
1,877,947 - Dsui_1786 0.64 -1.4
1,877,996 + Dsui_1786 0.67 -0.4
1,877,996 + Dsui_1786 0.67 -0.1
1,878,004 - Dsui_1786 0.67 -0.7
1,878,018 + Dsui_1786 0.68 -0.5
1,878,069 - Dsui_1786 0.71 -0.7
1,878,077 + Dsui_1786 0.72 -1.2
1,878,077 + -0.2
1,878,082 + -0.4
1,878,082 - Dsui_1786 0.72 -0.3
1,878,085 - Dsui_1786 0.72 -0.7
1,878,085 - Dsui_1786 0.72 -0.3
1,878,101 - Dsui_1786 0.73 -0.6
1,878,140 - Dsui_1786 0.75 -1.2
1,878,145 + Dsui_1786 0.76 -0.3
1,878,150 + Dsui_1786 0.76 +0.1
1,878,158 - Dsui_1786 0.77 -1.2
1,878,249 - Dsui_1786 0.82 -0.4
1,878,291 + Dsui_1786 0.84 -0.6
1,878,344 - Dsui_1786 0.87 -0.4
1,878,364 - Dsui_1786 0.89 -0.0
1,878,425 - -1.4
1,878,527 + -1.1
1,878,627 - -0.3
1,878,820 + +1.6
1,878,901 + +0.1
1,878,946 + -0.2
1,878,948 + -0.4
1,878,983 + -0.5
1,879,147 - -0.5
1,879,224 + +0.3
1,879,291 - -0.9
1,879,313 + +0.1
1,879,443 - -0.7
1,879,457 - -1.0
1,879,459 + -0.2
1,879,459 + -1.4
1,879,467 - -0.4
1,879,481 - -0.5
1,879,519 + Dsui_1787 0.10 +0.0
1,879,547 - Dsui_1787 0.11 -0.8

Or see this region's nucleotide sequence