Strain Fitness in Dechlorosoma suillum PS around Dsui_1312

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1310 and Dsui_1311 are separated by 85 nucleotidesDsui_1311 and Dsui_1312 are separated by 168 nucleotidesDsui_1312 and Dsui_1313 overlap by 4 nucleotidesDsui_1313 and Dsui_1314 are separated by 3 nucleotidesDsui_1314 and Dsui_1315 are separated by 15 nucleotides Dsui_1310: Dsui_1310 - molecular chaperone (small heat shock protein), at 1,371,222 to 1,371,653 _1310 Dsui_1311: Dsui_1311 - hypothetical protein, at 1,371,739 to 1,372,083 _1311 Dsui_1312: Dsui_1312 - NTP pyrophosphohydrolase, at 1,372,252 to 1,372,719 _1312 Dsui_1313: Dsui_1313 - Barstar, RNAse (barnase) inhibitor, at 1,372,716 to 1,373,162 _1313 Dsui_1314: Dsui_1314 - guanyl-specific ribonuclease Sa, at 1,373,166 to 1,373,558 _1314 Dsui_1315: Dsui_1315 - aspartyl-tRNA synthetase, at 1,373,574 to 1,375,373 _1315 Position (kb) 1372 1373Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1371.267 kb on - strand, within Dsui_1310at 1371.403 kb on + strand, within Dsui_1310at 1371.413 kb on + strand, within Dsui_1310at 1371.452 kb on - strand, within Dsui_1310at 1371.493 kb on + strand, within Dsui_1310at 1371.619 kb on - strandat 1371.724 kb on - strandat 1371.729 kb on - strandat 1371.751 kb on + strandat 1371.781 kb on - strand, within Dsui_1311at 1371.800 kb on + strandat 1371.812 kb on - strand, within Dsui_1311at 1371.824 kb on - strand, within Dsui_1311at 1371.829 kb on + strandat 1371.980 kb on - strand, within Dsui_1311at 1372.076 kb on - strandat 1372.206 kb on - strandat 1372.314 kb on + strandat 1372.356 kb on + strandat 1372.356 kb on + strandat 1372.360 kb on - strand, within Dsui_1312at 1372.402 kb on - strand, within Dsui_1312at 1372.422 kb on + strandat 1372.489 kb on - strand, within Dsui_1312at 1372.492 kb on + strand, within Dsui_1312at 1372.647 kb on + strand, within Dsui_1312at 1372.649 kb on + strand, within Dsui_1312at 1372.649 kb on - strand, within Dsui_1312at 1372.789 kb on - strand, within Dsui_1313at 1372.824 kb on + strandat 1372.837 kb on - strand, within Dsui_1313at 1372.837 kb on - strand, within Dsui_1313at 1372.856 kb on - strand, within Dsui_1313at 1372.879 kb on + strandat 1372.896 kb on + strand, within Dsui_1313at 1372.904 kb on - strand, within Dsui_1313at 1372.904 kb on - strand, within Dsui_1313at 1372.904 kb on - strand, within Dsui_1313at 1372.904 kb on - strand, within Dsui_1313at 1372.909 kb on - strand, within Dsui_1313at 1373.110 kb on + strand, within Dsui_1313at 1373.110 kb on + strandat 1373.118 kb on - strandat 1373.298 kb on + strandat 1373.305 kb on + strand, within Dsui_1314at 1373.320 kb on + strandat 1373.375 kb on - strand, within Dsui_1314at 1373.393 kb on + strand, within Dsui_1314at 1373.394 kb on + strandat 1373.571 kb on + strandat 1373.579 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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1,371,267 - Dsui_1310 0.10 -0.4
1,371,403 + Dsui_1310 0.42 -0.4
1,371,413 + Dsui_1310 0.44 -0.8
1,371,452 - Dsui_1310 0.53 +0.1
1,371,493 + Dsui_1310 0.63 -0.8
1,371,619 - +0.2
1,371,724 - +0.6
1,371,729 - -0.9
1,371,751 + -0.3
1,371,781 - Dsui_1311 0.12 -0.7
1,371,800 + -0.8
1,371,812 - Dsui_1311 0.21 -0.2
1,371,824 - Dsui_1311 0.25 -0.2
1,371,829 + -0.6
1,371,980 - Dsui_1311 0.70 -0.0
1,372,076 - +0.2
1,372,206 - -0.2
1,372,314 + +3.2
1,372,356 + +0.9
1,372,356 + +1.6
1,372,360 - Dsui_1312 0.23 -0.6
1,372,402 - Dsui_1312 0.32 -0.8
1,372,422 + +1.2
1,372,489 - Dsui_1312 0.51 -0.7
1,372,492 + Dsui_1312 0.51 -0.3
1,372,647 + Dsui_1312 0.84 -0.6
1,372,649 + Dsui_1312 0.85 -0.7
1,372,649 - Dsui_1312 0.85 -0.4
1,372,789 - Dsui_1313 0.16 -0.1
1,372,824 + +1.2
1,372,837 - Dsui_1313 0.27 -0.1
1,372,837 - Dsui_1313 0.27 -1.9
1,372,856 - Dsui_1313 0.31 +0.2
1,372,879 + +2.2
1,372,896 + Dsui_1313 0.40 +0.6
1,372,904 - Dsui_1313 0.42 -1.0
1,372,904 - Dsui_1313 0.42 -0.5
1,372,904 - Dsui_1313 0.42 -0.7
1,372,904 - Dsui_1313 0.42 +1.6
1,372,909 - Dsui_1313 0.43 -1.8
1,373,110 + Dsui_1313 0.88 +0.9
1,373,110 + +1.6
1,373,118 - +0.1
1,373,298 + +3.2
1,373,305 + Dsui_1314 0.35 -0.1
1,373,320 + +2.2
1,373,375 - Dsui_1314 0.53 +0.7
1,373,393 + Dsui_1314 0.58 -0.4
1,373,394 + -0.1
1,373,571 + -0.7
1,373,579 - +0.1

Or see this region's nucleotide sequence