Strain Fitness in Dechlorosoma suillum PS around Dsui_1278

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1277 and Dsui_1278 are separated by 12 nucleotidesDsui_1278 and Dsui_1279 are separated by 88 nucleotides Dsui_1277: Dsui_1277 - glycerol-3-phosphate dehydrogenase, at 1,338,290 to 1,339,285 _1277 Dsui_1278: Dsui_1278 - putative rRNA methylase SpoU family, at 1,339,298 to 1,339,762 _1278 Dsui_1279: Dsui_1279 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,339,851 to 1,341,557 _1279 Position (kb) 1339 1340Strain fitness (log2 ratio) -3 -2 -1 0 1at 1339.264 kb on + strandat 1339.333 kb on + strandat 1339.510 kb on - strand, within Dsui_1278at 1339.510 kb on - strand, within Dsui_1278at 1339.594 kb on - strand, within Dsui_1278at 1339.655 kb on + strand, within Dsui_1278at 1339.662 kb on + strand, within Dsui_1278at 1339.689 kb on + strand, within Dsui_1278at 1339.689 kb on + strand, within Dsui_1278at 1339.695 kb on + strand, within Dsui_1278at 1339.702 kb on + strand, within Dsui_1278at 1339.729 kb on - strandat 1339.731 kb on + strandat 1339.742 kb on + strandat 1339.749 kb on - strandat 1339.899 kb on + strandat 1339.902 kb on + strandat 1339.902 kb on - strandat 1339.912 kb on + strandat 1339.915 kb on - strandat 1339.919 kb on + strandat 1339.919 kb on + strandat 1339.919 kb on + strandat 1339.919 kb on + strandat 1339.927 kb on - strandat 1339.936 kb on - strandat 1339.994 kb on - strandat 1340.099 kb on + strand, within Dsui_1279at 1340.173 kb on + strand, within Dsui_1279at 1340.249 kb on - strand, within Dsui_1279at 1340.366 kb on - strand, within Dsui_1279at 1340.413 kb on - strand, within Dsui_1279at 1340.443 kb on + strand, within Dsui_1279at 1340.514 kb on + strand, within Dsui_1279at 1340.519 kb on + strand, within Dsui_1279at 1340.555 kb on - strand, within Dsui_1279at 1340.577 kb on + strand, within Dsui_1279at 1340.617 kb on - strand, within Dsui_1279at 1340.631 kb on - strand, within Dsui_1279at 1340.730 kb on + strand, within Dsui_1279at 1340.760 kb on + strand, within Dsui_1279

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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1,339,264 + -0.6
1,339,333 + -0.0
1,339,510 - Dsui_1278 0.46 -1.3
1,339,510 - Dsui_1278 0.46 -0.2
1,339,594 - Dsui_1278 0.64 -0.1
1,339,655 + Dsui_1278 0.77 -0.2
1,339,662 + Dsui_1278 0.78 +0.5
1,339,689 + Dsui_1278 0.84 -0.3
1,339,689 + Dsui_1278 0.84 -0.1
1,339,695 + Dsui_1278 0.85 +0.5
1,339,702 + Dsui_1278 0.87 +0.0
1,339,729 - -0.2
1,339,731 + -1.6
1,339,742 + -0.6
1,339,749 - -0.5
1,339,899 + -0.3
1,339,902 + -0.7
1,339,902 - -0.1
1,339,912 + -0.2
1,339,915 - -0.5
1,339,919 + +0.1
1,339,919 + -0.3
1,339,919 + -0.0
1,339,919 + -0.0
1,339,927 - -2.8
1,339,936 - -1.4
1,339,994 - -0.2
1,340,099 + Dsui_1279 0.15 -0.2
1,340,173 + Dsui_1279 0.19 -0.4
1,340,249 - Dsui_1279 0.23 +0.3
1,340,366 - Dsui_1279 0.30 -0.4
1,340,413 - Dsui_1279 0.33 +0.4
1,340,443 + Dsui_1279 0.35 -0.3
1,340,514 + Dsui_1279 0.39 -0.1
1,340,519 + Dsui_1279 0.39 +0.0
1,340,555 - Dsui_1279 0.41 -0.6
1,340,577 + Dsui_1279 0.43 +0.1
1,340,617 - Dsui_1279 0.45 -0.2
1,340,631 - Dsui_1279 0.46 +0.5
1,340,730 + Dsui_1279 0.51 -0.1
1,340,760 + Dsui_1279 0.53 -0.2

Or see this region's nucleotide sequence