Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2847

Experiment: MoYLS4 with Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2846 and DvMF_2847 are separated by 400 nucleotidesDvMF_2847 and DvMF_2848 are separated by 194 nucleotides DvMF_2846: DvMF_2846 - hypothetical protein (RefSeq), at 3,596,931 to 3,598,325 _2846 DvMF_2847: DvMF_2847 - no description, at 3,598,726 to 3,600,155 _2847 DvMF_2848: DvMF_2848 - CBS domain containing membrane protein (RefSeq), at 3,600,350 to 3,601,021 _2848 Position (kb) 3598 3599 3600 3601Strain fitness (log2 ratio) -1 0 1at 3598.546 kb on + strandat 3598.610 kb on + strandat 3598.955 kb on - strand, within DvMF_2847at 3598.992 kb on - strand, within DvMF_2847at 3599.177 kb on + strand, within DvMF_2847at 3599.177 kb on + strand, within DvMF_2847at 3599.185 kb on - strand, within DvMF_2847at 3599.301 kb on + strand, within DvMF_2847at 3599.369 kb on - strand, within DvMF_2847at 3599.654 kb on - strand, within DvMF_2847at 3599.780 kb on - strand, within DvMF_2847at 3600.112 kb on - strandat 3600.189 kb on - strandat 3600.444 kb on + strand, within DvMF_2848

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/ml
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3,598,546 + -0.3
3,598,610 + +0.3
3,598,955 - DvMF_2847 0.16 +0.0
3,598,992 - DvMF_2847 0.19 -0.1
3,599,177 + DvMF_2847 0.32 -0.1
3,599,177 + DvMF_2847 0.32 +0.0
3,599,185 - DvMF_2847 0.32 +0.0
3,599,301 + DvMF_2847 0.40 +0.7
3,599,369 - DvMF_2847 0.45 -0.1
3,599,654 - DvMF_2847 0.65 +0.0
3,599,780 - DvMF_2847 0.74 +0.2
3,600,112 - -0.6
3,600,189 - +0.2
3,600,444 + DvMF_2848 0.14 +0.2

Or see this region's nucleotide sequence