Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1454

Experiment: MoYLS4 with Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrplA and rplJ are separated by 184 nucleotidesrplJ and rplL are separated by 56 nucleotidesrplL and rpoB are separated by 662 nucleotides DvMF_1452: rplA - 50S ribosomal protein L1 (RefSeq), at 1,773,336 to 1,774,043 rplA DvMF_1453: rplJ - 50S ribosomal protein L10 (RefSeq), at 1,774,228 to 1,774,749 rplJ DvMF_1454: rplL - 50S ribosomal protein L7/L12 (RefSeq), at 1,774,806 to 1,775,189 rplL DvMF_1455: rpoB - DNA-directed RNA polymerase subunit beta (RefSeq), at 1,775,852 to 1,779,970 rpoB Position (kb) 1774 1775 1776Strain fitness (log2 ratio) -1 0 1at 1775.421 kb on - strandat 1775.572 kb on + strandat 1775.573 kb on - strandat 1775.630 kb on + strandat 1775.630 kb on + strandat 1775.638 kb on - strandat 1775.648 kb on - strandat 1775.788 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/ml
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1,775,421 - -0.2
1,775,572 + -0.1
1,775,573 - +0.0
1,775,630 + +0.3
1,775,630 + -0.1
1,775,638 - -0.5
1,775,648 - -0.6
1,775,788 + -0.3

Or see this region's nucleotide sequence