Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1055

Experiment: MoYLS4 with Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1054 and DvMF_1055 are separated by 554 nucleotidesDvMF_1055 and DvMF_1056 are separated by 161 nucleotidesDvMF_1056 and DvMF_1057 are separated by 268 nucleotides DvMF_1054: DvMF_1054 - protein of unknown function DUF1499 (RefSeq), at 1,290,974 to 1,291,501 _1054 DvMF_1055: DvMF_1055 - Mg2 transporter protein CorA family protein (RefSeq), at 1,292,056 to 1,292,988 _1055 DvMF_1056: DvMF_1056 - no description, at 1,293,150 to 1,293,528 _1056 DvMF_1057: DvMF_1057 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 1,293,797 to 1,295,701 _1057 Position (kb) 1292 1293Strain fitness (log2 ratio) -1 0 1at 1291.152 kb on + strand, within DvMF_1054at 1291.777 kb on + strandat 1291.956 kb on - strandat 1292.319 kb on + strand, within DvMF_1055at 1292.327 kb on - strand, within DvMF_1055at 1292.557 kb on + strand, within DvMF_1055at 1292.877 kb on + strand, within DvMF_1055at 1293.089 kb on + strandat 1293.358 kb on - strand, within DvMF_1056at 1293.468 kb on - strand, within DvMF_1056at 1293.590 kb on - strandat 1293.778 kb on + strandat 1293.829 kb on - strandat 1293.844 kb on + strandat 1293.880 kb on - strandat 1293.890 kb on - strandat 1293.972 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/ml
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1,291,152 + DvMF_1054 0.34 -1.1
1,291,777 + +0.8
1,291,956 - +0.2
1,292,319 + DvMF_1055 0.28 -0.0
1,292,327 - DvMF_1055 0.29 +0.1
1,292,557 + DvMF_1055 0.54 +0.2
1,292,877 + DvMF_1055 0.88 +0.2
1,293,089 + -0.5
1,293,358 - DvMF_1056 0.55 -0.1
1,293,468 - DvMF_1056 0.84 -0.1
1,293,590 - -0.5
1,293,778 + -0.2
1,293,829 - -0.0
1,293,844 + -0.4
1,293,880 - -0.5
1,293,890 - -0.2
1,293,972 + -0.6

Or see this region's nucleotide sequence