Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1053

Experiment: MoYLS4 with Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1052 and DvMF_1053 are separated by 281 nucleotidesDvMF_1053 and DvMF_1054 are separated by 167 nucleotides DvMF_1052: DvMF_1052 - multi-sensor hybrid histidine kinase (RefSeq), at 1,284,844 to 1,289,943 _1052 DvMF_1053: DvMF_1053 - transcriptional regulator, TetR family (RefSeq), at 1,290,225 to 1,290,806 _1053 DvMF_1054: DvMF_1054 - protein of unknown function DUF1499 (RefSeq), at 1,290,974 to 1,291,501 _1054 Position (kb) 1290 1291Strain fitness (log2 ratio) -1 0 1at 1289.777 kb on + strandat 1289.809 kb on - strandat 1290.060 kb on + strandat 1290.113 kb on - strandat 1290.684 kb on + strand, within DvMF_1053at 1291.152 kb on + strand, within DvMF_1054at 1291.777 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/ml
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1,289,777 + -0.2
1,289,809 - -0.4
1,290,060 + -0.6
1,290,113 - -0.1
1,290,684 + DvMF_1053 0.79 +0.8
1,291,152 + DvMF_1054 0.34 -1.1
1,291,777 + +0.8

Or see this region's nucleotide sequence