Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0495

Experiment: MoYLS4 with Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0494 and DvMF_0495 overlap by 8 nucleotidesDvMF_0495 and DvMF_0496 are separated by 94 nucleotides DvMF_0494: DvMF_0494 - RNA polymerase, sigma 70 subunit, RpoD subfamily (RefSeq), at 580,069 to 581,841 _0494 DvMF_0495: DvMF_0495 - DNA primase (RefSeq), at 581,834 to 583,633 _0495 DvMF_0496: DvMF_0496 - Smr protein/MutS2 (RefSeq), at 583,728 to 586,181 _0496 Position (kb) 581 582 583 584Strain fitness (log2 ratio) -1 0 1at 583.952 kb on + strandat 583.960 kb on - strandat 584.039 kb on + strand, within DvMF_0496at 584.170 kb on + strand, within DvMF_0496at 584.332 kb on + strand, within DvMF_0496at 584.340 kb on - strand, within DvMF_0496at 584.403 kb on - strand, within DvMF_0496

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/ml
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583,952 + -0.3
583,960 - -0.2
584,039 + DvMF_0496 0.13 -0.2
584,170 + DvMF_0496 0.18 -0.1
584,332 + DvMF_0496 0.25 +0.2
584,340 - DvMF_0496 0.25 -0.1
584,403 - DvMF_0496 0.28 -0.1

Or see this region's nucleotide sequence