Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0493

Experiment: MoYLS4 with Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0492 and DvMF_0493 are separated by 308 nucleotidesDvMF_0493 and DvMF_0494 are separated by 194 nucleotides DvMF_0492: DvMF_0492 - multicopper oxidase type 2 (RefSeq), at 576,558 to 578,495 _0492 DvMF_0493: DvMF_0493 - diguanylate cyclase (RefSeq), at 578,804 to 579,874 _0493 DvMF_0494: DvMF_0494 - RNA polymerase, sigma 70 subunit, RpoD subfamily (RefSeq), at 580,069 to 581,841 _0494 Position (kb) 578 579 580Strain fitness (log2 ratio) -1 0 1at 578.014 kb on - strand, within DvMF_0492at 578.188 kb on + strand, within DvMF_0492at 578.369 kb on + strandat 578.369 kb on + strandat 578.622 kb on + strandat 578.622 kb on + strandat 578.630 kb on - strandat 578.630 kb on - strandat 578.853 kb on + strandat 578.921 kb on + strand, within DvMF_0493at 578.983 kb on - strand, within DvMF_0493at 579.016 kb on - strand, within DvMF_0493

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/ml
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578,014 - DvMF_0492 0.75 -0.8
578,188 + DvMF_0492 0.84 +0.4
578,369 + -0.7
578,369 + -0.6
578,622 + -0.2
578,622 + -0.2
578,630 - -0.2
578,630 - -0.3
578,853 + +0.6
578,921 + DvMF_0493 0.11 -0.9
578,983 - DvMF_0493 0.17 -0.6
579,016 - DvMF_0493 0.20 -0.6

Or see this region's nucleotide sequence