Strain Fitness in Shewanella amazonensis SB2B around Sama_1921

Experiment: Uridine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Uridine
2,346,586	+				+0.4
2,346,587	-				-0.4
2,346,600	+				+1.0
2,346,601	-				-0.1
2,346,622	+				-1.1
2,347,316	+				-0.4
2,347,316	+				-0.4
2,347,316	+				-0.5
2,347,316	+				+2.2
2,347,391	+				+0.5
2,347,391	+				-0.5
2,347,391	+				+1.5
2,347,392	-				-0.5
2,347,392	-				-1.0
2,347,509	-				-0.5
2,347,599	+				-1.4
2,347,624	-				-2.5
2,347,661	+				-3.5
2,347,672	-				-1.1
2,347,722	-				-0.9
2,347,772	+		Sama_1921	0.10	-1.1
2,347,773	-		Sama_1921	0.11	-2.5
2,347,823	-		Sama_1921	0.13	-2.6
2,347,823	-		Sama_1921	0.13	-0.9
2,347,832	-		Sama_1921	0.14	-1.7
2,347,888	-		Sama_1921	0.16	-0.5
2,347,966	-		Sama_1921	0.21	-0.5
2,347,966	-		Sama_1921	0.21	-1.1
2,347,966	-		Sama_1921	0.21	-2.2
2,348,000	+		Sama_1921	0.22	-1.4
2,348,062	-		Sama_1921	0.25	-1.7
2,348,088	-		Sama_1921	0.27	-1.4
2,348,127	+		Sama_1921	0.29	-1.9
2,348,127	+		Sama_1921	0.29	-3.4
2,348,139	-		Sama_1921	0.29	-2.1
2,348,151	-		Sama_1921	0.30	-2.5
2,348,151	-		Sama_1921	0.30	-2.4
2,348,231	+		Sama_1921	0.34	-1.9
2,348,231	+		Sama_1921	0.34	-1.4
2,348,232	-		Sama_1921	0.34	-3.5
2,348,250	-		Sama_1921	0.35	-2.4
2,348,302	-		Sama_1921	0.38	-2.8
2,348,302	-		Sama_1921	0.38	-2.4
2,348,516	+		Sama_1921	0.49	-1.5
2,348,541	+		Sama_1921	0.50	-1.4
2,348,541	+		Sama_1921	0.50	-2.4
2,348,541	+		Sama_1921	0.50	-1.9
2,348,541	+		Sama_1921	0.50	-1.1
2,348,542	-		Sama_1921	0.50	-1.9
2,348,542	-		Sama_1921	0.50	-1.7
2,348,603	+		Sama_1921	0.53	-1.4
2,348,709	-		Sama_1921	0.59	-2.4
2,348,709	-		Sama_1921	0.59	-1.1
2,348,713	-		Sama_1921	0.59	-2.3
2,348,730	+		Sama_1921	0.60	-2.1
2,348,730	+		Sama_1921	0.60	-0.5
2,348,731	-		Sama_1921	0.60	-2.2
2,348,753	+		Sama_1921	0.61	-2.1
2,348,864	+		Sama_1921	0.67	-0.5
2,348,864	+		Sama_1921	0.67	-1.9
2,348,905	+		Sama_1921	0.69	-3.5
2,348,905	+		Sama_1921	0.69	+0.5
2,348,905	+		Sama_1921	0.69	-1.2
2,348,906	-		Sama_1921	0.69	-2.5
2,348,906	-		Sama_1921	0.69	-1.1
2,348,906	-		Sama_1921	0.69	-3.1
2,348,906	-		Sama_1921	0.69	-3.0
2,348,910	+		Sama_1921	0.69	-3.0
2,348,910	+		Sama_1921	0.69	-2.1
2,348,910	+		Sama_1921	0.69	-1.4
2,348,910	+		Sama_1921	0.69	-1.7
2,348,910	+		Sama_1921	0.69	-1.9
2,348,911	-		Sama_1921	0.69	-2.0
2,348,911	-		Sama_1921	0.69	-1.9
2,348,911	-		Sama_1921	0.69	-2.5
2,348,911	-		Sama_1921	0.69	-2.1
2,348,914	+		Sama_1921	0.70	-1.1
2,348,914	+		Sama_1921	0.70	-2.6
2,348,915	-		Sama_1921	0.70	-1.1
2,348,989	-		Sama_1921	0.73	-1.5
2,349,074	-		Sama_1921	0.78	-1.5
2,349,093	+		Sama_1921	0.79	-1.5
2,349,094	-		Sama_1921	0.79	-1.9
2,349,094	-		Sama_1921	0.79	-2.0
2,349,094	-		Sama_1921	0.79	+0.0
2,349,094	-		Sama_1921	0.79	+0.5
2,349,094	-		Sama_1921	0.79	-1.7
2,349,210	-		Sama_1921	0.85	-2.2
2,349,298	-		Sama_1921	0.89	-2.5
2,349,298	-		Sama_1921	0.89	-2.5
2,349,477	+				-0.7
2,349,477	+				-1.9
2,349,491	+				-2.9
2,349,491	+				+0.5
2,349,491	+				-1.0
2,349,492	-				-0.5
2,349,505	-				-2.5
2,349,505	-				-1.3
2,349,593	+				-0.8
2,349,593	+				-2.1
2,349,594	-				-4.0
2,349,594	-				-1.5
2,349,599	+				-1.7
2,349,599	+				-2.4
2,349,600	-				-2.9
2,349,626	+				-2.7
2,349,626	+				-0.8
2,349,626	+				-2.4
2,349,627	-				-1.4
2,349,627	-				-1.2
2,349,627	-				-2.4
2,349,630	+				-1.7
2,349,644	-				-1.7
2,349,813	-		Sama_1922	0.20	-2.5
2,349,817	+		Sama_1922	0.21	-1.7
2,349,818	-		Sama_1922	0.21	-2.7
2,349,983	+		Sama_1922	0.34	-3.7
2,349,997	-		Sama_1922	0.35	-1.9
2,350,017	+		Sama_1922	0.36	-1.7
2,350,018	-		Sama_1922	0.36	-1.8
2,350,050	-		Sama_1922	0.39	-1.9
2,350,050	-		Sama_1922	0.39	-2.4
2,350,050	-		Sama_1922	0.39	-1.5
2,350,118	+		Sama_1922	0.44	-2.7
2,350,180	+		Sama_1922	0.49	-2.5
2,350,190	+		Sama_1922	0.50	-2.5
2,350,190	+		Sama_1922	0.50	-2.1
2,350,238	+		Sama_1922	0.54	-2.9
2,350,238	+		Sama_1922	0.54	-1.9
2,350,238	+		Sama_1922	0.54	-2.4
2,350,239	-		Sama_1922	0.54	-1.8
2,350,239	-		Sama_1922	0.54	-2.1
2,350,260	+		Sama_1922	0.55	-4.1
2,350,260	+		Sama_1922	0.55	-2.9
2,350,261	-		Sama_1922	0.56	-2.5
2,350,261	-		Sama_1922	0.56	-4.1
2,350,372	-		Sama_1922	0.64	-1.1
2,350,372	-		Sama_1922	0.64	-1.4
2,350,383	+		Sama_1922	0.65	-4.7
2,350,384	-		Sama_1922	0.65	+1.0
2,350,406	+		Sama_1922	0.67	+2.0
2,350,407	-		Sama_1922	0.67	-3.0
2,350,425	+		Sama_1922	0.68	-1.7
2,350,425	+		Sama_1922	0.68	-1.1
2,350,425	+		Sama_1922	0.68	-2.1
2,350,425	+		Sama_1922	0.68	-0.9
2,350,425	+		Sama_1922	0.68	-3.2
2,350,425	+		Sama_1922	0.68	-2.2
2,350,425	+		Sama_1922	0.68	-3.9
2,350,425	+		Sama_1922	0.68	+0.5
2,350,425	+		Sama_1922	0.68	-2.4
2,350,425	+		Sama_1922	0.68	-1.5
2,350,426	-		Sama_1922	0.68	-3.0
2,350,426	-		Sama_1922	0.68	-1.5
2,350,426	-		Sama_1922	0.68	-3.1
2,350,426	-		Sama_1922	0.68	-2.1
2,350,426	-		Sama_1922	0.68	-1.5
2,350,426	-		Sama_1922	0.68	-1.1
2,350,426	-		Sama_1922	0.68	-1.5
2,350,426	-		Sama_1922	0.68	-2.4
2,350,427	+		Sama_1922	0.69	-1.9
2,350,427	+		Sama_1922	0.69	-3.6
2,350,427	+		Sama_1922	0.69	-0.9
2,350,428	-		Sama_1922	0.69	-2.4
2,350,428	-		Sama_1922	0.69	-1.3
2,350,428	-		Sama_1922	0.69	-0.5
2,350,429	+		Sama_1922	0.69	-2.1
2,350,429	+		Sama_1922	0.69	-2.5
2,350,429	+		Sama_1922	0.69	-1.5
2,350,429	+		Sama_1922	0.69	-2.5
2,350,429	+		Sama_1922	0.69	-2.4
2,350,429	+		Sama_1922	0.69	-1.9
2,350,429	+		Sama_1922	0.69	-1.4
2,350,429	+		Sama_1922	0.69	-3.1
2,350,429	+		Sama_1922	0.69	-2.1
2,350,429	+		Sama_1922	0.69	-2.1
2,350,430	-		Sama_1922	0.69	-3.8
2,350,430	-		Sama_1922	0.69	-1.1
2,350,430	-		Sama_1922	0.69	-3.0