Experiment: Uridine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0759 and Sama_0760 are separated by 332 nucleotides Sama_0760 and Sama_0761 overlap by 4 nucleotides
Sama_0759: Sama_0759 - alpha-ribazole-5'-phosphate phosphatase, putative (RefSeq), at 942,305 to 942,931
_0759
Sama_0760: Sama_0760 - iron-compound ABC transporter, ATP-binding protein, putative (RefSeq), at 943,264 to 944,079
_0760
Sama_0761: Sama_0761 - iron-compound ABC transporter, permease protein (RefSeq), at 944,076 to 945,119
_0761
Position (kb) 943
944
945 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 942.418 kb on + strand, within Sama_0759 at 942.419 kb on - strand, within Sama_0759 at 942.419 kb on - strand, within Sama_0759 at 942.439 kb on - strand, within Sama_0759 at 942.507 kb on + strand, within Sama_0759 at 942.507 kb on + strand, within Sama_0759 at 942.507 kb on + strand, within Sama_0759 at 942.508 kb on - strand, within Sama_0759 at 942.508 kb on - strand, within Sama_0759 at 942.508 kb on - strand, within Sama_0759 at 942.529 kb on + strand, within Sama_0759 at 942.529 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.547 kb on + strand, within Sama_0759 at 942.548 kb on - strand, within Sama_0759 at 942.548 kb on - strand, within Sama_0759 at 942.742 kb on + strand, within Sama_0759 at 942.742 kb on + strand, within Sama_0759 at 942.742 kb on + strand, within Sama_0759 at 942.743 kb on - strand, within Sama_0759 at 942.743 kb on - strand, within Sama_0759 at 942.837 kb on - strand, within Sama_0759 at 942.935 kb on + strand at 942.945 kb on - strand at 942.988 kb on + strand at 942.989 kb on - strand at 943.006 kb on + strand at 943.007 kb on - strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.083 kb on + strand at 943.083 kb on + strand at 943.083 kb on + strand at 943.083 kb on + strand at 943.083 kb on + strand at 943.084 kb on - strand at 943.084 kb on - strand at 943.084 kb on - strand at 943.084 kb on - strand at 943.084 kb on - strand at 943.088 kb on + strand at 943.088 kb on + strand at 943.088 kb on + strand at 943.089 kb on - strand at 943.089 kb on - strand at 943.089 kb on - strand at 943.141 kb on - strand at 943.141 kb on - strand at 943.141 kb on - strand at 943.162 kb on - strand at 943.198 kb on + strand at 943.198 kb on + strand at 943.198 kb on + strand at 943.199 kb on - strand at 943.199 kb on - strand at 943.199 kb on - strand at 943.199 kb on - strand at 943.250 kb on + strand at 943.250 kb on + strand at 943.250 kb on + strand at 943.251 kb on - strand at 943.251 kb on - strand at 943.304 kb on + strand at 943.305 kb on - strand at 943.360 kb on + strand, within Sama_0760 at 943.360 kb on + strand, within Sama_0760 at 943.360 kb on + strand, within Sama_0760 at 943.361 kb on - strand, within Sama_0760 at 943.361 kb on - strand, within Sama_0760 at 943.422 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.446 kb on - strand, within Sama_0760 at 943.446 kb on - strand, within Sama_0760 at 943.464 kb on + strand, within Sama_0760 at 943.474 kb on + strand, within Sama_0760 at 943.475 kb on - strand, within Sama_0760 at 943.572 kb on + strand, within Sama_0760 at 943.623 kb on + strand, within Sama_0760 at 943.623 kb on + strand, within Sama_0760 at 943.624 kb on - strand, within Sama_0760 at 943.660 kb on + strand, within Sama_0760 at 943.749 kb on + strand, within Sama_0760 at 943.824 kb on + strand, within Sama_0760 at 943.824 kb on + strand, within Sama_0760 at 943.939 kb on - strand, within Sama_0760 at 943.961 kb on + strand, within Sama_0760 at 943.977 kb on + strand, within Sama_0760 at 943.977 kb on + strand, within Sama_0760 at 943.977 kb on + strand, within Sama_0760 at 943.978 kb on - strand, within Sama_0760 at 943.978 kb on - strand, within Sama_0760 at 943.978 kb on - strand, within Sama_0760 at 943.978 kb on - strand, within Sama_0760 at 943.983 kb on + strand, within Sama_0760 at 943.983 kb on + strand, within Sama_0760 at 943.983 kb on + strand, within Sama_0760 at 943.983 kb on + strand, within Sama_0760 at 943.984 kb on - strand, within Sama_0760 at 943.984 kb on - strand, within Sama_0760 at 944.020 kb on + strand at 944.020 kb on + strand at 944.020 kb on + strand at 944.020 kb on + strand at 944.021 kb on - strand at 944.021 kb on - strand at 944.023 kb on + strand at 944.023 kb on + strand at 944.024 kb on - strand at 944.024 kb on - strand at 944.024 kb on - strand at 944.024 kb on - strand at 944.026 kb on + strand at 944.026 kb on + strand at 944.026 kb on + strand at 944.026 kb on + strand at 944.026 kb on + strand at 944.026 kb on + strand at 944.026 kb on + strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.032 kb on + strand at 944.032 kb on + strand at 944.032 kb on + strand at 944.032 kb on + strand at 944.033 kb on - strand at 944.033 kb on - strand at 944.033 kb on - strand at 944.033 kb on - strand at 944.033 kb on - strand at 944.033 kb on - strand at 944.033 kb on - strand at 944.098 kb on + strand at 944.098 kb on + strand at 944.099 kb on - strand at 944.139 kb on - strand at 944.139 kb on - strand at 944.220 kb on + strand, within Sama_0761 at 944.228 kb on + strand, within Sama_0761 at 944.228 kb on + strand, within Sama_0761 at 944.228 kb on + strand, within Sama_0761 at 944.228 kb on + strand, within Sama_0761 at 944.229 kb on - strand, within Sama_0761 at 944.263 kb on - strand, within Sama_0761 at 944.277 kb on - strand, within Sama_0761 at 944.277 kb on - strand, within Sama_0761 at 944.305 kb on + strand, within Sama_0761 at 944.305 kb on + strand, within Sama_0761 at 944.306 kb on - strand, within Sama_0761 at 944.391 kb on + strand, within Sama_0761 at 944.438 kb on - strand, within Sama_0761 at 944.453 kb on + strand, within Sama_0761 at 944.453 kb on + strand, within Sama_0761 at 944.454 kb on - strand, within Sama_0761 at 944.454 kb on - strand, within Sama_0761 at 944.454 kb on - strand, within Sama_0761 at 944.454 kb on - strand, within Sama_0761 at 944.465 kb on - strand, within Sama_0761 at 944.507 kb on + strand, within Sama_0761 at 944.507 kb on + strand, within Sama_0761 at 944.508 kb on - strand, within Sama_0761 at 944.508 kb on - strand, within Sama_0761 at 944.508 kb on - strand, within Sama_0761 at 944.508 kb on - strand, within Sama_0761 at 944.519 kb on - strand, within Sama_0761 at 944.532 kb on - strand, within Sama_0761 at 944.629 kb on + strand, within Sama_0761 at 944.650 kb on + strand, within Sama_0761 at 944.650 kb on + strand, within Sama_0761 at 944.651 kb on - strand, within Sama_0761 at 944.665 kb on + strand, within Sama_0761 at 944.665 kb on + strand, within Sama_0761 at 944.666 kb on - strand, within Sama_0761 at 944.666 kb on - strand, within Sama_0761 at 944.828 kb on + strand, within Sama_0761 at 944.829 kb on - strand, within Sama_0761 at 944.840 kb on + strand, within Sama_0761 at 944.840 kb on + strand, within Sama_0761 at 944.840 kb on + strand, within Sama_0761 at 944.841 kb on - strand, within Sama_0761 at 944.882 kb on - strand, within Sama_0761 at 944.882 kb on - strand, within Sama_0761 at 945.059 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine remove 942,418 + Sama_0759 0.18 -1.1 942,419 - Sama_0759 0.18 +1.3 942,419 - Sama_0759 0.18 +0.6 942,439 - Sama_0759 0.21 +0.0 942,507 + Sama_0759 0.32 -0.1 942,507 + Sama_0759 0.32 +1.0 942,507 + Sama_0759 0.32 -1.1 942,508 - Sama_0759 0.32 +2.1 942,508 - Sama_0759 0.32 -1.4 942,508 - Sama_0759 0.32 +0.4 942,529 + Sama_0759 0.36 -0.4 942,529 + Sama_0759 0.36 +0.0 942,543 + Sama_0759 0.38 -1.0 942,543 + Sama_0759 0.38 +0.0 942,543 + Sama_0759 0.38 -0.6 942,543 + Sama_0759 0.38 +0.1 942,543 + Sama_0759 0.38 -0.1 942,543 + Sama_0759 0.38 +0.3 942,543 + Sama_0759 0.38 +0.1 942,543 + Sama_0759 0.38 -0.3 942,543 + Sama_0759 0.38 +1.1 942,543 + Sama_0759 0.38 -1.0 942,543 + Sama_0759 0.38 +0.1 942,543 + Sama_0759 0.38 -0.8 942,543 + Sama_0759 0.38 -0.3 942,543 + Sama_0759 0.38 +0.2 942,543 + Sama_0759 0.38 +0.5 942,543 + Sama_0759 0.38 +1.5 942,543 + Sama_0759 0.38 -0.1 942,543 + Sama_0759 0.38 -0.1 942,544 - Sama_0759 0.38 +0.4 942,544 - Sama_0759 0.38 +0.4 942,544 - Sama_0759 0.38 -0.0 942,544 - Sama_0759 0.38 +0.9 942,544 - Sama_0759 0.38 +0.0 942,544 - Sama_0759 0.38 +0.4 942,544 - Sama_0759 0.38 -0.0 942,544 - Sama_0759 0.38 -0.1 942,544 - Sama_0759 0.38 +0.3 942,544 - Sama_0759 0.38 -0.4 942,544 - Sama_0759 0.38 -0.1 942,544 - Sama_0759 0.38 +3.9 942,544 - Sama_0759 0.38 +0.7 942,544 - Sama_0759 0.38 +0.2 942,544 - Sama_0759 0.38 +0.9 942,544 - Sama_0759 0.38 +0.3 942,544 - Sama_0759 0.38 +0.1 942,544 - Sama_0759 0.38 +0.1 942,544 - Sama_0759 0.38 +0.5 942,544 - Sama_0759 0.38 +1.3 942,547 + Sama_0759 0.39 +0.1 942,548 - Sama_0759 0.39 -0.5 942,548 - Sama_0759 0.39 +0.4 942,742 + Sama_0759 0.70 +1.2 942,742 + Sama_0759 0.70 +0.2 942,742 + Sama_0759 0.70 -0.3 942,743 - Sama_0759 0.70 +0.4 942,743 - Sama_0759 0.70 +1.4 942,837 - Sama_0759 0.85 +1.0 942,935 + +0.2 942,945 - +0.0 942,988 + +0.2 942,989 - -0.5 943,006 + -1.9 943,007 - -0.2 943,078 + -0.1 943,078 + -0.4 943,078 + -0.5 943,078 + -0.9 943,078 + -0.9 943,078 + -1.0 943,078 + -0.3 943,078 + -0.8 943,078 + -0.1 943,078 + +0.3 943,078 + +1.6 943,079 - -3.0 943,079 - -2.1 943,079 - -2.3 943,079 - -0.1 943,079 - -0.7 943,079 - -3.4 943,079 - -1.3 943,079 - -1.8 943,079 - -0.1 943,083 + +0.8 943,083 + +0.8 943,083 + +0.5 943,083 + -1.2 943,083 + -0.4 943,084 - -1.1 943,084 - -0.9 943,084 - -1.9 943,084 - -1.6 943,084 - -1.7 943,088 + +0.3 943,088 + +0.5 943,088 + +0.3 943,089 - -1.8 943,089 - -1.9 943,089 - -0.7 943,141 - -0.6 943,141 - -0.6 943,141 - -0.4 943,162 - -0.6 943,198 + +0.7 943,198 + -0.1 943,198 + +0.6 943,199 - -1.4 943,199 - -0.3 943,199 - -2.1 943,199 - -2.4 943,250 + +0.3 943,250 + +0.0 943,250 + -1.2 943,251 - -1.0 943,251 - -0.2 943,304 + -3.6 943,305 - -1.3 943,360 + Sama_0760 0.12 -4.1 943,360 + Sama_0760 0.12 -2.3 943,360 + Sama_0760 0.12 -2.9 943,361 - Sama_0760 0.12 -2.6 943,361 - Sama_0760 0.12 -2.9 943,422 + Sama_0760 0.19 -1.7 943,445 + Sama_0760 0.22 -2.7 943,445 + Sama_0760 0.22 -3.6 943,445 + Sama_0760 0.22 -2.1 943,445 + Sama_0760 0.22 -1.4 943,445 + Sama_0760 0.22 -1.1 943,445 + Sama_0760 0.22 -1.3 943,445 + Sama_0760 0.22 -2.6 943,446 - Sama_0760 0.22 -2.3 943,446 - Sama_0760 0.22 -2.9 943,464 + Sama_0760 0.25 -1.7 943,474 + Sama_0760 0.26 -1.4 943,475 - Sama_0760 0.26 -3.0 943,572 + Sama_0760 0.38 -4.5 943,623 + Sama_0760 0.44 -3.8 943,623 + Sama_0760 0.44 -1.9 943,624 - Sama_0760 0.44 -2.7 943,660 + Sama_0760 0.49 -2.7 943,749 + Sama_0760 0.59 -2.4 943,824 + Sama_0760 0.69 -2.4 943,824 + Sama_0760 0.69 -2.1 943,939 - Sama_0760 0.83 -2.1 943,961 + Sama_0760 0.85 -1.6 943,977 + Sama_0760 0.87 -0.3 943,977 + Sama_0760 0.87 -3.4 943,977 + Sama_0760 0.87 -2.0 943,978 - Sama_0760 0.88 -2.3 943,978 - Sama_0760 0.88 -2.3 943,978 - Sama_0760 0.88 -3.7 943,978 - Sama_0760 0.88 -2.5 943,983 + Sama_0760 0.88 -1.7 943,983 + Sama_0760 0.88 -1.4 943,983 + Sama_0760 0.88 -2.4 943,983 + Sama_0760 0.88 -2.6 943,984 - Sama_0760 0.88 -3.7 943,984 - Sama_0760 0.88 -2.9 944,020 + -1.3 944,020 + -0.7 944,020 + -1.7 944,020 + -4.1 944,021 - -2.0 944,021 - -3.1 944,023 + +0.3 944,023 + +0.1 944,024 - -2.4 944,024 - -1.0 944,024 - -3.1 944,024 - -1.4 944,026 + +1.1 944,026 + -0.2 944,026 + -0.6 944,026 + +1.9 944,026 + -0.1 944,026 + -0.2 944,026 + -0.7 944,027 - -2.8 944,027 - +0.9 944,027 - -1.1 944,027 - -0.6 944,027 - +0.5 944,027 - -1.4 944,027 - -2.1 944,027 - -3.0 944,027 - -1.2 944,032 + +0.4 944,032 + -0.3 944,032 + +0.2 944,032 + +0.5 944,033 - -1.7 944,033 - -1.1 944,033 - -2.4 944,033 - -2.0 944,033 - -2.4 944,033 - -3.3 944,033 - +0.1 944,098 + -0.6 944,098 + -2.2 944,099 - -1.5 944,139 - -1.9 944,139 - -2.1 944,220 + Sama_0761 0.14 -2.7 944,228 + Sama_0761 0.15 -0.7 944,228 + Sama_0761 0.15 -2.1 944,228 + Sama_0761 0.15 -2.8 944,228 + Sama_0761 0.15 -2.1 944,229 - Sama_0761 0.15 -1.7 944,263 - Sama_0761 0.18 -2.3 944,277 - Sama_0761 0.19 -2.0 944,277 - Sama_0761 0.19 -2.1 944,305 + Sama_0761 0.22 -3.8 944,305 + Sama_0761 0.22 -2.7 944,306 - Sama_0761 0.22 -2.8 944,391 + Sama_0761 0.30 -3.1 944,438 - Sama_0761 0.35 -1.1 944,453 + Sama_0761 0.36 -3.2 944,453 + Sama_0761 0.36 -3.8 944,454 - Sama_0761 0.36 -1.4 944,454 - Sama_0761 0.36 -3.1 944,454 - Sama_0761 0.36 -2.8 944,454 - Sama_0761 0.36 -1.9 944,465 - Sama_0761 0.37 -3.2 944,507 + Sama_0761 0.41 -0.7 944,507 + Sama_0761 0.41 -3.4 944,508 - Sama_0761 0.41 +0.9 944,508 - Sama_0761 0.41 -1.7 944,508 - Sama_0761 0.41 -2.6 944,508 - Sama_0761 0.41 -2.6 944,519 - Sama_0761 0.42 -1.9 944,532 - Sama_0761 0.44 -1.9 944,629 + Sama_0761 0.53 -4.2 944,650 + Sama_0761 0.55 -2.8 944,650 + Sama_0761 0.55 -2.9 944,651 - Sama_0761 0.55 -4.0 944,665 + Sama_0761 0.56 -2.6 944,665 + Sama_0761 0.56 -2.9 944,666 - Sama_0761 0.57 -2.7 944,666 - Sama_0761 0.57 -2.9 944,828 + Sama_0761 0.72 -2.7 944,829 - Sama_0761 0.72 -2.6 944,840 + Sama_0761 0.73 -2.8 944,840 + Sama_0761 0.73 -3.6 944,840 + Sama_0761 0.73 -1.1 944,841 - Sama_0761 0.73 -2.1 944,882 - Sama_0761 0.77 -3.0 944,882 - Sama_0761 0.77 -1.1 945,059 + -1.4
Or see this region's nucleotide sequence