Experiment: Uridine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glyS and glyQ are separated by 25 nucleotides glyQ and Sama_0027 are separated by 107 nucleotides Sama_0027 and Sama_0028 are separated by 104 nucleotides
Sama_0025: glyS - glycyl-tRNA synthetase subunit beta (RefSeq), at 23,457 to 25,526
glyS
Sama_0026: glyQ - glycyl-tRNA synthetase subunit alpha (RefSeq), at 25,552 to 26,457
glyQ
Sama_0027: Sama_0027 - DNA-3-methyladenine glycosylase I (RefSeq), at 26,565 to 27,134
_0027
Sama_0028: Sama_0028 - amidohydrolase (RefSeq), at 27,239 to 30,427
_0028
Position (kb) 25
26
27 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 25.541 kb on - strand at 25.541 kb on - strand at 25.554 kb on - strand at 25.554 kb on - strand at 25.554 kb on - strand at 25.554 kb on - strand at 25.554 kb on - strand at 26.481 kb on - strand at 26.481 kb on - strand at 26.498 kb on - strand at 26.498 kb on - strand at 26.500 kb on - strand at 26.500 kb on - strand at 26.500 kb on - strand at 26.500 kb on - strand at 26.500 kb on - strand at 26.500 kb on - strand at 26.500 kb on - strand at 26.500 kb on - strand at 26.500 kb on - strand at 26.500 kb on - strand at 26.500 kb on - strand at 26.500 kb on - strand at 26.506 kb on + strand at 26.506 kb on + strand at 26.506 kb on + strand at 26.506 kb on + strand at 26.506 kb on + strand at 26.506 kb on + strand at 26.506 kb on + strand at 26.506 kb on + strand at 26.507 kb on - strand at 26.507 kb on - strand at 26.507 kb on - strand at 26.507 kb on - strand at 26.519 kb on - strand at 26.519 kb on - strand at 26.519 kb on - strand at 26.522 kb on + strand at 26.523 kb on - strand at 26.523 kb on - strand at 26.523 kb on - strand at 26.523 kb on - strand at 26.523 kb on - strand at 26.523 kb on - strand at 26.523 kb on - strand at 26.523 kb on - strand at 26.549 kb on + strand at 26.550 kb on - strand at 26.554 kb on - strand at 26.573 kb on + strand at 26.573 kb on + strand at 26.573 kb on + strand at 26.574 kb on - strand at 26.574 kb on - strand at 26.574 kb on - strand at 26.574 kb on - strand at 26.574 kb on - strand at 26.606 kb on + strand at 26.606 kb on + strand at 26.606 kb on + strand at 26.606 kb on + strand at 26.606 kb on + strand at 26.606 kb on + strand at 26.606 kb on + strand at 26.606 kb on + strand at 26.606 kb on + strand at 26.606 kb on + strand at 26.607 kb on - strand at 26.607 kb on - strand at 26.607 kb on - strand at 26.607 kb on - strand at 26.607 kb on - strand at 26.607 kb on - strand at 26.607 kb on - strand at 26.607 kb on - strand at 26.607 kb on - strand at 26.607 kb on - strand at 26.623 kb on - strand, within Sama_0027 at 26.623 kb on - strand, within Sama_0027 at 26.636 kb on - strand, within Sama_0027 at 26.652 kb on + strand, within Sama_0027 at 26.652 kb on + strand, within Sama_0027 at 26.652 kb on + strand, within Sama_0027 at 26.652 kb on + strand, within Sama_0027 at 26.652 kb on + strand, within Sama_0027 at 26.653 kb on - strand, within Sama_0027 at 26.653 kb on - strand, within Sama_0027 at 26.653 kb on - strand, within Sama_0027 at 26.653 kb on - strand, within Sama_0027 at 26.717 kb on + strand, within Sama_0027 at 26.717 kb on + strand, within Sama_0027 at 26.717 kb on + strand, within Sama_0027 at 26.718 kb on - strand, within Sama_0027 at 26.718 kb on - strand, within Sama_0027 at 26.742 kb on + strand, within Sama_0027 at 26.742 kb on + strand, within Sama_0027 at 26.743 kb on - strand, within Sama_0027 at 26.774 kb on + strand, within Sama_0027 at 26.774 kb on + strand, within Sama_0027 at 26.774 kb on + strand, within Sama_0027 at 26.774 kb on + strand, within Sama_0027 at 26.774 kb on + strand, within Sama_0027 at 26.774 kb on + strand, within Sama_0027 at 26.775 kb on - strand, within Sama_0027 at 26.779 kb on + strand, within Sama_0027 at 26.779 kb on + strand, within Sama_0027 at 26.780 kb on - strand, within Sama_0027 at 26.787 kb on + strand, within Sama_0027 at 26.787 kb on + strand, within Sama_0027 at 26.787 kb on + strand, within Sama_0027 at 26.787 kb on + strand, within Sama_0027 at 26.787 kb on + strand, within Sama_0027 at 26.787 kb on + strand, within Sama_0027 at 26.787 kb on + strand, within Sama_0027 at 26.788 kb on - strand, within Sama_0027 at 26.788 kb on - strand, within Sama_0027 at 26.788 kb on - strand, within Sama_0027 at 26.788 kb on - strand, within Sama_0027 at 26.798 kb on + strand, within Sama_0027 at 26.830 kb on + strand, within Sama_0027 at 26.830 kb on + strand, within Sama_0027 at 26.830 kb on + strand, within Sama_0027 at 26.830 kb on + strand, within Sama_0027 at 26.831 kb on - strand, within Sama_0027 at 26.831 kb on - strand, within Sama_0027 at 26.831 kb on - strand, within Sama_0027 at 26.831 kb on - strand, within Sama_0027 at 26.831 kb on - strand, within Sama_0027 at 26.831 kb on - strand, within Sama_0027 at 26.880 kb on + strand, within Sama_0027 at 26.881 kb on - strand, within Sama_0027 at 26.881 kb on - strand, within Sama_0027 at 26.889 kb on + strand, within Sama_0027 at 26.889 kb on + strand, within Sama_0027 at 26.889 kb on + strand, within Sama_0027 at 26.889 kb on + strand, within Sama_0027 at 26.889 kb on + strand, within Sama_0027 at 26.890 kb on - strand, within Sama_0027 at 26.890 kb on - strand, within Sama_0027 at 27.023 kb on + strand, within Sama_0027 at 27.024 kb on - strand, within Sama_0027 at 27.056 kb on + strand, within Sama_0027 at 27.056 kb on + strand, within Sama_0027 at 27.063 kb on + strand, within Sama_0027 at 27.063 kb on + strand, within Sama_0027 at 27.063 kb on + strand, within Sama_0027 at 27.063 kb on + strand, within Sama_0027 at 27.064 kb on - strand, within Sama_0027 at 27.064 kb on - strand, within Sama_0027 at 27.064 kb on - strand, within Sama_0027 at 27.064 kb on - strand, within Sama_0027 at 27.071 kb on + strand, within Sama_0027 at 27.071 kb on + strand, within Sama_0027 at 27.071 kb on + strand, within Sama_0027 at 27.071 kb on + strand, within Sama_0027 at 27.071 kb on + strand, within Sama_0027 at 27.072 kb on - strand, within Sama_0027 at 27.072 kb on - strand, within Sama_0027 at 27.092 kb on + strand at 27.120 kb on + strand at 27.145 kb on + strand at 27.145 kb on + strand at 27.145 kb on + strand at 27.146 kb on - strand at 27.210 kb on + strand at 27.210 kb on + strand at 27.210 kb on + strand at 27.210 kb on + strand at 27.211 kb on - strand at 27.211 kb on - strand at 27.211 kb on - strand at 27.211 kb on - strand at 27.211 kb on - strand at 27.240 kb on + strand at 27.240 kb on + strand at 27.312 kb on + strand at 27.312 kb on + strand at 27.312 kb on + strand at 27.313 kb on - strand at 27.313 kb on - strand at 27.325 kb on + strand at 27.385 kb on + strand at 27.391 kb on + strand at 27.392 kb on - strand at 27.392 kb on - strand at 27.392 kb on - strand at 27.392 kb on - strand at 27.392 kb on - strand at 27.392 kb on - strand at 27.406 kb on + strand at 27.406 kb on + strand at 27.406 kb on + strand at 27.406 kb on + strand at 27.407 kb on - strand at 27.407 kb on - strand at 27.407 kb on - strand at 27.407 kb on - strand at 27.407 kb on - strand at 27.407 kb on - strand at 27.407 kb on - strand at 27.418 kb on + strand at 27.418 kb on + strand at 27.418 kb on + strand at 27.418 kb on + strand at 27.419 kb on - strand at 27.419 kb on - strand at 27.419 kb on - strand at 27.419 kb on - strand at 27.419 kb on - strand at 27.419 kb on - strand at 27.419 kb on - strand at 27.425 kb on + strand at 27.425 kb on + strand at 27.426 kb on - strand at 27.426 kb on - strand at 27.426 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine remove 25,541 - -1.6 25,541 - -0.4 25,554 - -0.2 25,554 - -0.5 25,554 - -0.4 25,554 - -0.5 25,554 - -0.9 26,481 - +0.6 26,481 - -0.7 26,498 - -1.4 26,498 - -0.2 26,500 - -0.1 26,500 - +0.1 26,500 - +0.0 26,500 - -0.3 26,500 - -0.1 26,500 - -0.2 26,500 - -0.4 26,500 - -0.5 26,500 - -0.4 26,500 - -0.2 26,500 - +2.2 26,500 - -0.1 26,506 + -0.5 26,506 + -0.7 26,506 + -0.5 26,506 + -0.1 26,506 + -0.0 26,506 + +0.6 26,506 + -0.0 26,506 + +0.3 26,507 - +0.6 26,507 - +1.0 26,507 - -0.8 26,507 - -0.5 26,519 - -1.1 26,519 - -1.1 26,519 - -0.7 26,522 + -0.4 26,523 - -0.3 26,523 - +0.5 26,523 - -0.4 26,523 - -0.6 26,523 - +0.2 26,523 - +0.3 26,523 - -0.3 26,523 - +0.9 26,549 + -0.3 26,550 - -1.4 26,554 - +0.8 26,573 + +0.5 26,573 + +0.1 26,573 + -0.6 26,574 - -0.2 26,574 - -1.3 26,574 - -0.8 26,574 - +0.1 26,574 - +0.2 26,606 + -0.7 26,606 + +0.3 26,606 + -0.6 26,606 + +0.5 26,606 + +1.0 26,606 + -0.2 26,606 + -1.5 26,606 + +0.0 26,606 + -0.1 26,606 + +0.1 26,607 - +0.9 26,607 - +0.9 26,607 - -0.6 26,607 - +0.7 26,607 - +1.2 26,607 - -0.2 26,607 - -0.1 26,607 - -1.0 26,607 - -0.0 26,607 - -0.1 26,623 - Sama_0027 0.10 -1.1 26,623 - Sama_0027 0.10 -0.4 26,636 - Sama_0027 0.12 -1.1 26,652 + Sama_0027 0.15 -0.4 26,652 + Sama_0027 0.15 -0.2 26,652 + Sama_0027 0.15 -0.0 26,652 + Sama_0027 0.15 +1.6 26,652 + Sama_0027 0.15 +0.3 26,653 - Sama_0027 0.15 +0.2 26,653 - Sama_0027 0.15 -0.7 26,653 - Sama_0027 0.15 -0.8 26,653 - Sama_0027 0.15 -1.6 26,717 + Sama_0027 0.27 -0.2 26,717 + Sama_0027 0.27 +1.9 26,717 + Sama_0027 0.27 +1.6 26,718 - Sama_0027 0.27 +0.0 26,718 - Sama_0027 0.27 -0.4 26,742 + Sama_0027 0.31 -0.4 26,742 + Sama_0027 0.31 -0.0 26,743 - Sama_0027 0.31 -0.7 26,774 + Sama_0027 0.37 -0.3 26,774 + Sama_0027 0.37 -0.5 26,774 + Sama_0027 0.37 -0.6 26,774 + Sama_0027 0.37 -0.4 26,774 + Sama_0027 0.37 +0.2 26,774 + Sama_0027 0.37 +0.4 26,775 - Sama_0027 0.37 +0.6 26,779 + Sama_0027 0.38 -0.5 26,779 + Sama_0027 0.38 -0.8 26,780 - Sama_0027 0.38 -0.0 26,787 + Sama_0027 0.39 -1.2 26,787 + Sama_0027 0.39 -2.1 26,787 + Sama_0027 0.39 -1.0 26,787 + Sama_0027 0.39 -0.9 26,787 + Sama_0027 0.39 -0.4 26,787 + Sama_0027 0.39 -1.4 26,787 + Sama_0027 0.39 -0.2 26,788 - Sama_0027 0.39 -1.4 26,788 - Sama_0027 0.39 -0.1 26,788 - Sama_0027 0.39 +0.4 26,788 - Sama_0027 0.39 -0.1 26,798 + Sama_0027 0.41 +0.3 26,830 + Sama_0027 0.46 +0.3 26,830 + Sama_0027 0.46 -0.9 26,830 + Sama_0027 0.46 -0.2 26,830 + Sama_0027 0.46 +0.1 26,831 - Sama_0027 0.47 -0.1 26,831 - Sama_0027 0.47 -0.3 26,831 - Sama_0027 0.47 +0.2 26,831 - Sama_0027 0.47 -0.8 26,831 - Sama_0027 0.47 -0.5 26,831 - Sama_0027 0.47 -0.7 26,880 + Sama_0027 0.55 +0.2 26,881 - Sama_0027 0.55 +0.0 26,881 - Sama_0027 0.55 -0.3 26,889 + Sama_0027 0.57 +0.7 26,889 + Sama_0027 0.57 +1.8 26,889 + Sama_0027 0.57 -0.6 26,889 + Sama_0027 0.57 +0.0 26,889 + Sama_0027 0.57 +1.8 26,890 - Sama_0027 0.57 +0.0 26,890 - Sama_0027 0.57 +0.6 27,023 + Sama_0027 0.80 -0.8 27,024 - Sama_0027 0.81 -0.2 27,056 + Sama_0027 0.86 +0.1 27,056 + Sama_0027 0.86 +0.0 27,063 + Sama_0027 0.87 -0.5 27,063 + Sama_0027 0.87 -0.3 27,063 + Sama_0027 0.87 +1.4 27,063 + Sama_0027 0.87 +0.2 27,064 - Sama_0027 0.88 +0.5 27,064 - Sama_0027 0.88 -0.4 27,064 - Sama_0027 0.88 +0.2 27,064 - Sama_0027 0.88 -1.0 27,071 + Sama_0027 0.89 +0.2 27,071 + Sama_0027 0.89 +1.1 27,071 + Sama_0027 0.89 -1.4 27,071 + Sama_0027 0.89 -1.1 27,071 + Sama_0027 0.89 -0.2 27,072 - Sama_0027 0.89 +1.1 27,072 - Sama_0027 0.89 +0.2 27,092 + -1.1 27,120 + -0.1 27,145 + +0.2 27,145 + -0.6 27,145 + -0.0 27,146 - -0.3 27,210 + -0.2 27,210 + -0.4 27,210 + +0.7 27,210 + -0.2 27,211 - +0.1 27,211 - +0.6 27,211 - +0.2 27,211 - +0.0 27,211 - -1.4 27,240 + -0.2 27,240 + -0.1 27,312 + +0.1 27,312 + -0.1 27,312 + -0.5 27,313 - -0.7 27,313 - +1.2 27,325 + -0.9 27,385 + -1.0 27,391 + +0.6 27,392 - -0.7 27,392 - +0.2 27,392 - +0.4 27,392 - -0.8 27,392 - -1.9 27,392 - +0.3 27,406 + -0.6 27,406 + -0.7 27,406 + -0.8 27,406 + +0.7 27,407 - +1.2 27,407 - -0.4 27,407 - -0.3 27,407 - -0.4 27,407 - -0.6 27,407 - +2.8 27,407 - -0.6 27,418 + +0.9 27,418 + +0.3 27,418 + +0.1 27,418 + +0.6 27,419 - +0.1 27,419 - +0.8 27,419 - +0.4 27,419 - +0.5 27,419 - +0.8 27,419 - -0.4 27,419 - -1.3 27,425 + -0.1 27,425 + -0.4 27,426 - +0.4 27,426 - +0.7 27,426 - -0.4
Or see this region's nucleotide sequence