Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_934 and HP15_935 are separated by 24 nucleotides HP15_935 and HP15_936 are separated by 105 nucleotides HP15_936 and HP15_937 are separated by 24 nucleotides HP15_937 and HP15_938 overlap by 8 nucleotides
HP15_934: HP15_934 - extradiol ring-cleavage dioxygenase, class III enzyme, subunit B, at 949,904 to 950,677
_934
HP15_935: HP15_935 - DoxD-like family protein, at 950,702 to 951,142
_935
HP15_936: HP15_936 - transcriptional regulator, LysR family protein, at 951,248 to 952,138
_936
HP15_937: HP15_937 - spermidine/putrescine ABC transporter, permease protein, at 952,163 to 952,990
_937
HP15_938: HP15_938 - spermidine/putrescine ABC transporter, permease protein, at 952,983 to 953,864
_938
Position (kb) 951
952
953 Strain fitness (log2 ratio) -2
-1
0
1
2 at 950.272 kb on - strand, within HP15_934 at 950.399 kb on - strand, within HP15_934 at 950.411 kb on - strand, within HP15_934 at 950.414 kb on + strand, within HP15_934 at 950.471 kb on + strand, within HP15_934 at 950.585 kb on + strand, within HP15_934 at 950.645 kb on + strand at 951.000 kb on - strand, within HP15_935 at 951.005 kb on - strand, within HP15_935 at 951.074 kb on + strand, within HP15_935 at 951.309 kb on - strand at 951.321 kb on + strand at 951.321 kb on + strand at 951.328 kb on - strand at 951.329 kb on - strand at 951.329 kb on - strand at 951.381 kb on + strand, within HP15_936 at 951.381 kb on + strand, within HP15_936 at 951.389 kb on - strand, within HP15_936 at 951.533 kb on - strand, within HP15_936 at 951.608 kb on - strand, within HP15_936 at 951.626 kb on - strand, within HP15_936 at 951.689 kb on + strand, within HP15_936 at 951.696 kb on + strand, within HP15_936 at 951.696 kb on + strand, within HP15_936 at 951.704 kb on - strand, within HP15_936 at 951.711 kb on + strand, within HP15_936 at 951.714 kb on - strand, within HP15_936 at 951.818 kb on + strand, within HP15_936 at 951.938 kb on - strand, within HP15_936 at 952.032 kb on + strand, within HP15_936 at 952.082 kb on + strand at 952.088 kb on - strand at 952.090 kb on - strand at 952.154 kb on - strand at 952.193 kb on - strand at 952.292 kb on - strand, within HP15_937 at 952.292 kb on - strand, within HP15_937 at 952.453 kb on + strand, within HP15_937 at 952.471 kb on - strand, within HP15_937 at 952.471 kb on - strand, within HP15_937 at 952.518 kb on + strand, within HP15_937 at 952.542 kb on - strand, within HP15_937 at 952.604 kb on + strand, within HP15_937 at 952.604 kb on + strand, within HP15_937 at 952.604 kb on + strand, within HP15_937 at 952.604 kb on + strand, within HP15_937 at 952.660 kb on + strand, within HP15_937 at 952.688 kb on + strand, within HP15_937 at 952.796 kb on + strand, within HP15_937 at 952.841 kb on + strand, within HP15_937 at 952.914 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 950,272 - HP15_934 0.48 +1.8 950,399 - HP15_934 0.64 -0.8 950,411 - HP15_934 0.66 -0.6 950,414 + HP15_934 0.66 +0.5 950,471 + HP15_934 0.73 -0.2 950,585 + HP15_934 0.88 -0.7 950,645 + -0.1 951,000 - HP15_935 0.68 +0.3 951,005 - HP15_935 0.69 +2.3 951,074 + HP15_935 0.84 +1.5 951,309 - -0.2 951,321 + +1.6 951,321 + +0.3 951,328 - -1.0 951,329 - +1.8 951,329 - +0.2 951,381 + HP15_936 0.15 -0.5 951,381 + HP15_936 0.15 -0.1 951,389 - HP15_936 0.16 -0.6 951,533 - HP15_936 0.32 -0.7 951,608 - HP15_936 0.40 +1.6 951,626 - HP15_936 0.42 +0.4 951,689 + HP15_936 0.49 +1.4 951,696 + HP15_936 0.50 -0.6 951,696 + HP15_936 0.50 -0.8 951,704 - HP15_936 0.51 -1.3 951,711 + HP15_936 0.52 +1.3 951,714 - HP15_936 0.52 -0.6 951,818 + HP15_936 0.64 +0.4 951,938 - HP15_936 0.77 -0.6 952,032 + HP15_936 0.88 -0.6 952,082 + +1.8 952,088 - -1.2 952,090 - +0.1 952,154 - +0.2 952,193 - +0.1 952,292 - HP15_937 0.16 -0.3 952,292 - HP15_937 0.16 -0.5 952,453 + HP15_937 0.35 -0.2 952,471 - HP15_937 0.37 +1.5 952,471 - HP15_937 0.37 +1.5 952,518 + HP15_937 0.43 -0.3 952,542 - HP15_937 0.46 +0.0 952,604 + HP15_937 0.53 -0.5 952,604 + HP15_937 0.53 -0.5 952,604 + HP15_937 0.53 -2.0 952,604 + HP15_937 0.53 +0.7 952,660 + HP15_937 0.60 +1.9 952,688 + HP15_937 0.63 +1.2 952,796 + HP15_937 0.76 -0.4 952,841 + HP15_937 0.82 -1.1 952,914 + +2.1
Or see this region's nucleotide sequence