Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_930 and HP15_931 are separated by 81 nucleotides HP15_931 and HP15_932 are separated by 113 nucleotides HP15_932 and HP15_933 overlap by 4 nucleotides
HP15_930: HP15_930 - branched-chain amino acid transport permease, at 943,903 to 944,898
_930
HP15_931: HP15_931 - lipoprotein, at 944,980 to 945,507
_931
HP15_932: HP15_932 - efflux transporter, RND family, MFP subunit, at 945,621 to 946,790
_932
HP15_933: HP15_933 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family, at 946,787 to 949,891
_933
Position (kb) 945
946
947 Strain fitness (log2 ratio) -2
-1
0
1
2 at 944.772 kb on + strand, within HP15_930 at 944.827 kb on - strand at 944.866 kb on + strand at 944.932 kb on + strand at 944.932 kb on + strand at 944.978 kb on + strand at 945.189 kb on - strand, within HP15_931 at 945.578 kb on + strand at 945.672 kb on - strand at 945.688 kb on + strand at 945.696 kb on - strand at 945.893 kb on - strand, within HP15_932 at 946.066 kb on - strand, within HP15_932 at 946.068 kb on + strand, within HP15_932 at 946.076 kb on - strand, within HP15_932 at 946.109 kb on - strand, within HP15_932 at 946.146 kb on + strand, within HP15_932 at 946.154 kb on - strand, within HP15_932 at 946.196 kb on - strand, within HP15_932 at 946.219 kb on + strand, within HP15_932 at 946.327 kb on - strand, within HP15_932 at 946.363 kb on + strand, within HP15_932 at 946.363 kb on + strand, within HP15_932 at 946.476 kb on - strand, within HP15_932 at 946.483 kb on - strand, within HP15_932 at 946.495 kb on - strand, within HP15_932 at 946.619 kb on - strand, within HP15_932 at 946.711 kb on + strand at 946.782 kb on + strand at 946.850 kb on - strand at 946.873 kb on - strand at 947.001 kb on + strand at 947.059 kb on - strand at 947.068 kb on - strand at 947.108 kb on + strand, within HP15_933 at 947.131 kb on - strand, within HP15_933 at 947.205 kb on + strand, within HP15_933 at 947.205 kb on + strand, within HP15_933 at 947.205 kb on + strand, within HP15_933 at 947.205 kb on + strand, within HP15_933 at 947.212 kb on + strand, within HP15_933 at 947.239 kb on - strand, within HP15_933 at 947.249 kb on - strand, within HP15_933 at 947.282 kb on + strand, within HP15_933 at 947.332 kb on + strand, within HP15_933 at 947.340 kb on - strand, within HP15_933 at 947.341 kb on - strand, within HP15_933 at 947.360 kb on - strand, within HP15_933 at 947.391 kb on + strand, within HP15_933 at 947.453 kb on - strand, within HP15_933 at 947.479 kb on - strand, within HP15_933 at 947.500 kb on - strand, within HP15_933 at 947.582 kb on + strand, within HP15_933 at 947.583 kb on - strand, within HP15_933 at 947.583 kb on - strand, within HP15_933 at 947.657 kb on - strand, within HP15_933 at 947.707 kb on + strand, within HP15_933 at 947.755 kb on + strand, within HP15_933 at 947.755 kb on + strand, within HP15_933 at 947.765 kb on + strand, within HP15_933 at 947.773 kb on - strand, within HP15_933
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 944,772 + HP15_930 0.87 -0.1 944,827 - -0.7 944,866 + -0.1 944,932 + -0.4 944,932 + -0.1 944,978 + -0.8 945,189 - HP15_931 0.40 +0.5 945,578 + +1.1 945,672 - +2.2 945,688 + -0.8 945,696 - -0.6 945,893 - HP15_932 0.23 +1.4 946,066 - HP15_932 0.38 -0.8 946,068 + HP15_932 0.38 +1.4 946,076 - HP15_932 0.39 +0.1 946,109 - HP15_932 0.42 -0.3 946,146 + HP15_932 0.45 +0.3 946,154 - HP15_932 0.46 +2.1 946,196 - HP15_932 0.49 +1.5 946,219 + HP15_932 0.51 +1.6 946,327 - HP15_932 0.60 +0.4 946,363 + HP15_932 0.63 +1.4 946,363 + HP15_932 0.63 +1.5 946,476 - HP15_932 0.73 -0.2 946,483 - HP15_932 0.74 -1.2 946,495 - HP15_932 0.75 -0.1 946,619 - HP15_932 0.85 -0.3 946,711 + -0.2 946,782 + -0.2 946,850 - -0.4 946,873 - -0.3 947,001 + +1.1 947,059 - +1.9 947,068 - +0.1 947,108 + HP15_933 0.10 -0.8 947,131 - HP15_933 0.11 +1.6 947,205 + HP15_933 0.13 +0.2 947,205 + HP15_933 0.13 -0.5 947,205 + HP15_933 0.13 -0.7 947,205 + HP15_933 0.13 -0.6 947,212 + HP15_933 0.14 +1.4 947,239 - HP15_933 0.15 +0.2 947,249 - HP15_933 0.15 -0.6 947,282 + HP15_933 0.16 +0.0 947,332 + HP15_933 0.18 -0.3 947,340 - HP15_933 0.18 -0.2 947,341 - HP15_933 0.18 +0.5 947,360 - HP15_933 0.18 -0.5 947,391 + HP15_933 0.19 +1.3 947,453 - HP15_933 0.21 +1.7 947,479 - HP15_933 0.22 -0.6 947,500 - HP15_933 0.23 -0.4 947,582 + HP15_933 0.26 +0.4 947,583 - HP15_933 0.26 -0.3 947,583 - HP15_933 0.26 +0.0 947,657 - HP15_933 0.28 -1.8 947,707 + HP15_933 0.30 -0.8 947,755 + HP15_933 0.31 -0.2 947,755 + HP15_933 0.31 -0.1 947,765 + HP15_933 0.31 -0.3 947,773 - HP15_933 0.32 -0.6
Or see this region's nucleotide sequence