Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_446 and HP15_447 overlap by 4 nucleotides HP15_447 and HP15_448 overlap by 4 nucleotides
HP15_446: HP15_446 - glycosyltransferase, at 450,221 to 451,276
_446
HP15_447: HP15_447 - glycosyltransferase, at 451,273 to 452,388
_447
HP15_448: HP15_448 - protein containing DUF1022, at 452,385 to 453,380
_448
Position (kb) 451
452
453 Strain fitness (log2 ratio) -1
0
1
2 at 450.334 kb on + strand, within HP15_446 at 450.334 kb on + strand, within HP15_446 at 450.342 kb on - strand, within HP15_446 at 450.352 kb on - strand, within HP15_446 at 450.352 kb on - strand, within HP15_446 at 450.352 kb on - strand, within HP15_446 at 450.391 kb on - strand, within HP15_446 at 450.443 kb on + strand, within HP15_446 at 450.465 kb on - strand, within HP15_446 at 450.485 kb on + strand, within HP15_446 at 450.516 kb on + strand, within HP15_446 at 450.542 kb on + strand, within HP15_446 at 450.550 kb on - strand, within HP15_446 at 450.553 kb on - strand, within HP15_446 at 450.611 kb on + strand, within HP15_446 at 450.701 kb on - strand, within HP15_446 at 450.702 kb on + strand, within HP15_446 at 450.707 kb on - strand, within HP15_446 at 450.707 kb on - strand, within HP15_446 at 450.763 kb on + strand, within HP15_446 at 450.783 kb on - strand, within HP15_446 at 450.823 kb on - strand, within HP15_446 at 450.918 kb on - strand, within HP15_446 at 450.937 kb on - strand, within HP15_446 at 450.990 kb on + strand, within HP15_446 at 451.087 kb on - strand, within HP15_446 at 451.236 kb on + strand at 451.294 kb on + strand at 451.424 kb on - strand, within HP15_447 at 451.558 kb on - strand, within HP15_447 at 451.650 kb on - strand, within HP15_447 at 451.673 kb on + strand, within HP15_447 at 451.695 kb on + strand, within HP15_447 at 451.710 kb on + strand, within HP15_447 at 451.718 kb on - strand, within HP15_447 at 451.894 kb on + strand, within HP15_447 at 451.998 kb on - strand, within HP15_447 at 452.020 kb on + strand, within HP15_447 at 452.139 kb on - strand, within HP15_447 at 452.326 kb on + strand at 452.351 kb on + strand at 453.378 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 450,334 + HP15_446 0.11 +1.1 450,334 + HP15_446 0.11 +2.2 450,342 - HP15_446 0.11 -0.4 450,352 - HP15_446 0.12 -0.5 450,352 - HP15_446 0.12 -0.3 450,352 - HP15_446 0.12 -0.0 450,391 - HP15_446 0.16 -0.8 450,443 + HP15_446 0.21 +1.1 450,465 - HP15_446 0.23 +0.1 450,485 + HP15_446 0.25 -0.1 450,516 + HP15_446 0.28 +1.5 450,542 + HP15_446 0.30 -0.4 450,550 - HP15_446 0.31 -0.4 450,553 - HP15_446 0.31 -0.4 450,611 + HP15_446 0.37 -0.1 450,701 - HP15_446 0.45 +1.4 450,702 + HP15_446 0.46 -0.2 450,707 - HP15_446 0.46 -0.4 450,707 - HP15_446 0.46 +0.3 450,763 + HP15_446 0.51 -0.4 450,783 - HP15_446 0.53 +1.4 450,823 - HP15_446 0.57 +0.1 450,918 - HP15_446 0.66 -0.2 450,937 - HP15_446 0.68 +0.6 450,990 + HP15_446 0.73 -0.5 451,087 - HP15_446 0.82 -0.2 451,236 + -0.5 451,294 + -0.1 451,424 - HP15_447 0.14 +1.4 451,558 - HP15_447 0.26 +1.5 451,650 - HP15_447 0.34 +0.2 451,673 + HP15_447 0.36 +1.6 451,695 + HP15_447 0.38 +0.2 451,710 + HP15_447 0.39 +0.2 451,718 - HP15_447 0.40 -1.0 451,894 + HP15_447 0.56 +1.7 451,998 - HP15_447 0.65 +1.0 452,020 + HP15_447 0.67 +0.5 452,139 - HP15_447 0.78 -1.0 452,326 + +2.5 452,351 + -0.7 453,378 - +1.4
Or see this region's nucleotide sequence