Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2832 and HP15_2833 are separated by 390 nucleotides HP15_2833 and HP15_2834 are separated by 27 nucleotides HP15_2834 and HP15_2835 are separated by 282 nucleotides HP15_2835 and HP15_2836 are separated by 91 nucleotides
HP15_2832: HP15_2832 - DNA damage response helicase (yejH or radD) (from data) , at 2,974,962 to 2,976,719
_2832
HP15_2833: HP15_2833 - conserved hypothetical protein, at 2,977,110 to 2,977,334
_2833
HP15_2834: HP15_2834 - OmpA/MotB domain protein, at 2,977,362 to 2,978,171
_2834
HP15_2835: HP15_2835 - cold shock, CspA, at 2,978,454 to 2,978,660
_2835
HP15_2836: HP15_2836 - conserved hypothetical protein, membrane, at 2,978,752 to 2,979,126
_2836
Position (kb)
2977
2978
2979 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2976.405 kb on - strand, within HP15_2832 at 2976.514 kb on + strand, within HP15_2832 at 2976.745 kb on - strand at 2977.024 kb on + strand at 2977.029 kb on - strand at 2977.032 kb on - strand at 2977.130 kb on + strand at 2977.238 kb on - strand, within HP15_2833 at 2977.270 kb on - strand, within HP15_2833 at 2977.271 kb on + strand, within HP15_2833 at 2977.329 kb on + strand at 2977.392 kb on + strand at 2977.459 kb on + strand, within HP15_2834 at 2977.459 kb on + strand, within HP15_2834 at 2977.644 kb on - strand, within HP15_2834 at 2977.644 kb on - strand, within HP15_2834 at 2977.681 kb on - strand, within HP15_2834 at 2977.701 kb on + strand, within HP15_2834 at 2977.728 kb on - strand, within HP15_2834 at 2977.728 kb on - strand, within HP15_2834 at 2977.730 kb on + strand, within HP15_2834 at 2977.730 kb on + strand, within HP15_2834 at 2977.730 kb on + strand, within HP15_2834 at 2977.730 kb on + strand, within HP15_2834 at 2977.738 kb on - strand, within HP15_2834 at 2977.738 kb on - strand, within HP15_2834 at 2977.738 kb on - strand, within HP15_2834 at 2977.738 kb on - strand, within HP15_2834 at 2977.738 kb on - strand, within HP15_2834 at 2977.787 kb on + strand, within HP15_2834 at 2977.794 kb on - strand, within HP15_2834 at 2977.807 kb on + strand, within HP15_2834 at 2977.812 kb on + strand, within HP15_2834 at 2977.849 kb on + strand, within HP15_2834 at 2977.856 kb on + strand, within HP15_2834 at 2977.864 kb on - strand, within HP15_2834 at 2977.945 kb on - strand, within HP15_2834 at 2977.949 kb on + strand, within HP15_2834 at 2977.980 kb on - strand, within HP15_2834 at 2977.988 kb on + strand, within HP15_2834 at 2978.002 kb on - strand, within HP15_2834 at 2978.010 kb on - strand, within HP15_2834 at 2978.039 kb on + strand, within HP15_2834 at 2978.184 kb on + strand at 2978.186 kb on - strand at 2978.287 kb on - strand at 2978.287 kb on - strand at 2978.296 kb on + strand at 2978.325 kb on - strand at 2978.525 kb on - strand, within HP15_2835 at 2978.525 kb on - strand, within HP15_2835 at 2978.555 kb on + strand, within HP15_2835 at 2978.597 kb on - strand, within HP15_2835 at 2978.665 kb on - strand at 2978.691 kb on + strand at 2978.699 kb on - strand at 2978.700 kb on - strand at 2978.700 kb on - strand at 2978.758 kb on - strand at 2978.758 kb on - strand at 2978.859 kb on + strand, within HP15_2836 at 2978.867 kb on - strand, within HP15_2836 at 2978.883 kb on - strand, within HP15_2836 at 2978.962 kb on + strand, within HP15_2836 at 2978.994 kb on - strand, within HP15_2836
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 2,976,405 - HP15_2832 0.82 +1.7 2,976,514 + HP15_2832 0.88 +1.5 2,976,745 - -0.2 2,977,024 + +0.4 2,977,029 - +1.9 2,977,032 - +0.4 2,977,130 + -0.4 2,977,238 - HP15_2833 0.57 +1.5 2,977,270 - HP15_2833 0.71 +2.3 2,977,271 + HP15_2833 0.72 -0.3 2,977,329 + +4.3 2,977,392 + +1.7 2,977,459 + HP15_2834 0.12 -0.2 2,977,459 + HP15_2834 0.12 +0.1 2,977,644 - HP15_2834 0.35 +1.8 2,977,644 - HP15_2834 0.35 +0.3 2,977,681 - HP15_2834 0.39 +1.6 2,977,701 + HP15_2834 0.42 +0.4 2,977,728 - HP15_2834 0.45 +0.0 2,977,728 - HP15_2834 0.45 +0.8 2,977,730 + HP15_2834 0.45 +1.2 2,977,730 + HP15_2834 0.45 +0.2 2,977,730 + HP15_2834 0.45 +1.6 2,977,730 + HP15_2834 0.45 -0.3 2,977,738 - HP15_2834 0.46 +0.3 2,977,738 - HP15_2834 0.46 +1.5 2,977,738 - HP15_2834 0.46 +0.3 2,977,738 - HP15_2834 0.46 +0.0 2,977,738 - HP15_2834 0.46 +1.7 2,977,787 + HP15_2834 0.52 -0.4 2,977,794 - HP15_2834 0.53 +0.1 2,977,807 + HP15_2834 0.55 -0.1 2,977,812 + HP15_2834 0.56 +1.6 2,977,849 + HP15_2834 0.60 -0.3 2,977,856 + HP15_2834 0.61 -0.4 2,977,864 - HP15_2834 0.62 +2.4 2,977,945 - HP15_2834 0.72 -0.8 2,977,949 + HP15_2834 0.72 -0.1 2,977,980 - HP15_2834 0.76 +1.9 2,977,988 + HP15_2834 0.77 +0.1 2,978,002 - HP15_2834 0.79 +1.2 2,978,010 - HP15_2834 0.80 -2.1 2,978,039 + HP15_2834 0.84 +1.7 2,978,184 + -0.4 2,978,186 - +0.4 2,978,287 - +2.4 2,978,287 - -0.3 2,978,296 + +0.1 2,978,325 - +0.5 2,978,525 - HP15_2835 0.34 +1.5 2,978,525 - HP15_2835 0.34 -0.7 2,978,555 + HP15_2835 0.49 +1.6 2,978,597 - HP15_2835 0.69 +1.1 2,978,665 - -0.7 2,978,691 + +0.4 2,978,699 - -2.0 2,978,700 - +0.1 2,978,700 - +1.0 2,978,758 - +1.9 2,978,758 - +0.1 2,978,859 + HP15_2836 0.29 +1.1 2,978,867 - HP15_2836 0.31 -0.2 2,978,883 - HP15_2836 0.35 +1.1 2,978,962 + HP15_2836 0.56 -0.5 2,978,994 - HP15_2836 0.65 +0.0
Or see this region's nucleotide sequence