Strain Fitness in Marinobacter adhaerens HP15 around HP15_2784

Experiment: L-Alanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2783 and HP15_2784 are separated by 108 nucleotidesHP15_2784 and HP15_2785 are separated by 25 nucleotides HP15_2783: HP15_2783 - polyhydroxyalkanoate depolymerase, intracellular, at 2,932,146 to 2,933,363 _2783 HP15_2784: HP15_2784 - 3-ketoacyl-(acyl-carrier-protein) reductase, at 2,933,472 to 2,934,215 _2784 HP15_2785: HP15_2785 - polyhydroxyalkanoic acid synthase, at 2,934,241 to 2,936,139 _2785 Position (kb) 2933 2934 2935Strain fitness (log2 ratio) -2 -1 0 1 2at 2932.499 kb on + strand, within HP15_2783at 2932.577 kb on - strand, within HP15_2783at 2932.841 kb on + strand, within HP15_2783at 2932.969 kb on - strand, within HP15_2783at 2932.969 kb on - strand, within HP15_2783at 2932.969 kb on - strand, within HP15_2783at 2932.969 kb on - strand, within HP15_2783at 2932.969 kb on - strand, within HP15_2783at 2932.984 kb on - strand, within HP15_2783at 2933.042 kb on - strand, within HP15_2783at 2933.065 kb on + strand, within HP15_2783at 2933.068 kb on - strand, within HP15_2783at 2933.068 kb on - strand, within HP15_2783at 2933.105 kb on + strand, within HP15_2783at 2933.108 kb on - strand, within HP15_2783at 2933.210 kb on + strand, within HP15_2783at 2933.213 kb on - strand, within HP15_2783at 2933.221 kb on + strand, within HP15_2783at 2933.229 kb on - strand, within HP15_2783at 2933.229 kb on - strand, within HP15_2783at 2933.249 kb on + strandat 2933.560 kb on + strand, within HP15_2784at 2933.659 kb on - strand, within HP15_2784at 2933.712 kb on + strand, within HP15_2784at 2933.754 kb on + strand, within HP15_2784at 2933.814 kb on + strand, within HP15_2784at 2933.814 kb on + strand, within HP15_2784at 2933.822 kb on - strand, within HP15_2784at 2933.822 kb on - strand, within HP15_2784at 2933.822 kb on - strand, within HP15_2784at 2933.975 kb on + strand, within HP15_2784at 2934.032 kb on - strand, within HP15_2784at 2934.053 kb on + strand, within HP15_2784at 2934.414 kb on - strandat 2934.416 kb on + strandat 2934.498 kb on + strand, within HP15_2785at 2934.506 kb on - strand, within HP15_2785at 2934.516 kb on + strand, within HP15_2785at 2934.538 kb on + strand, within HP15_2785at 2934.670 kb on - strand, within HP15_2785at 2934.760 kb on - strand, within HP15_2785at 2934.775 kb on - strand, within HP15_2785at 2934.788 kb on - strand, within HP15_2785at 2934.861 kb on - strand, within HP15_2785at 2934.893 kb on + strand, within HP15_2785at 2934.893 kb on + strand, within HP15_2785at 2934.893 kb on + strand, within HP15_2785at 2934.893 kb on + strand, within HP15_2785at 2934.901 kb on - strand, within HP15_2785at 2935.035 kb on + strand, within HP15_2785at 2935.095 kb on - strand, within HP15_2785at 2935.095 kb on - strand, within HP15_2785at 2935.095 kb on - strand, within HP15_2785at 2935.100 kb on - strand, within HP15_2785at 2935.196 kb on + strand, within HP15_2785

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine as (N)
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2,932,499 + HP15_2783 0.29 +0.9
2,932,577 - HP15_2783 0.35 -2.1
2,932,841 + HP15_2783 0.57 -0.4
2,932,969 - HP15_2783 0.68 -0.2
2,932,969 - HP15_2783 0.68 +1.7
2,932,969 - HP15_2783 0.68 +1.6
2,932,969 - HP15_2783 0.68 +0.1
2,932,969 - HP15_2783 0.68 +1.3
2,932,984 - HP15_2783 0.69 -0.1
2,933,042 - HP15_2783 0.74 -0.3
2,933,065 + HP15_2783 0.75 -2.1
2,933,068 - HP15_2783 0.76 -0.1
2,933,068 - HP15_2783 0.76 -0.8
2,933,105 + HP15_2783 0.79 -1.6
2,933,108 - HP15_2783 0.79 -0.3
2,933,210 + HP15_2783 0.87 +0.3
2,933,213 - HP15_2783 0.88 +0.4
2,933,221 + HP15_2783 0.88 +0.5
2,933,229 - HP15_2783 0.89 -0.3
2,933,229 - HP15_2783 0.89 +0.8
2,933,249 + -1.4
2,933,560 + HP15_2784 0.12 -0.0
2,933,659 - HP15_2784 0.25 -0.0
2,933,712 + HP15_2784 0.32 +1.6
2,933,754 + HP15_2784 0.38 +1.3
2,933,814 + HP15_2784 0.46 +1.5
2,933,814 + HP15_2784 0.46 -0.1
2,933,822 - HP15_2784 0.47 -0.8
2,933,822 - HP15_2784 0.47 -1.9
2,933,822 - HP15_2784 0.47 -1.1
2,933,975 + HP15_2784 0.68 -1.5
2,934,032 - HP15_2784 0.75 -0.9
2,934,053 + HP15_2784 0.78 -0.9
2,934,414 - -0.1
2,934,416 + -0.3
2,934,498 + HP15_2785 0.14 +1.2
2,934,506 - HP15_2785 0.14 -0.5
2,934,516 + HP15_2785 0.14 +0.0
2,934,538 + HP15_2785 0.16 -0.1
2,934,670 - HP15_2785 0.23 -0.3
2,934,760 - HP15_2785 0.27 +0.1
2,934,775 - HP15_2785 0.28 -0.1
2,934,788 - HP15_2785 0.29 -0.9
2,934,861 - HP15_2785 0.33 -0.8
2,934,893 + HP15_2785 0.34 +0.2
2,934,893 + HP15_2785 0.34 -0.2
2,934,893 + HP15_2785 0.34 -0.2
2,934,893 + HP15_2785 0.34 -0.1
2,934,901 - HP15_2785 0.35 -0.6
2,935,035 + HP15_2785 0.42 -0.1
2,935,095 - HP15_2785 0.45 +1.8
2,935,095 - HP15_2785 0.45 -0.3
2,935,095 - HP15_2785 0.45 -1.8
2,935,100 - HP15_2785 0.45 -0.6
2,935,196 + HP15_2785 0.50 +1.7

Or see this region's nucleotide sequence