Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2783 and HP15_2784 are separated by 108 nucleotides HP15_2784 and HP15_2785 are separated by 25 nucleotides
HP15_2783: HP15_2783 - polyhydroxyalkanoate depolymerase, intracellular, at 2,932,146 to 2,933,363
_2783
HP15_2784: HP15_2784 - 3-ketoacyl-(acyl-carrier-protein) reductase, at 2,933,472 to 2,934,215
_2784
HP15_2785: HP15_2785 - polyhydroxyalkanoic acid synthase, at 2,934,241 to 2,936,139
_2785
Position (kb)
2933
2934
2935 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2932.499 kb on + strand, within HP15_2783 at 2932.577 kb on - strand, within HP15_2783 at 2932.841 kb on + strand, within HP15_2783 at 2932.969 kb on - strand, within HP15_2783 at 2932.969 kb on - strand, within HP15_2783 at 2932.969 kb on - strand, within HP15_2783 at 2932.969 kb on - strand, within HP15_2783 at 2932.969 kb on - strand, within HP15_2783 at 2932.984 kb on - strand, within HP15_2783 at 2933.042 kb on - strand, within HP15_2783 at 2933.065 kb on + strand, within HP15_2783 at 2933.068 kb on - strand, within HP15_2783 at 2933.068 kb on - strand, within HP15_2783 at 2933.105 kb on + strand, within HP15_2783 at 2933.108 kb on - strand, within HP15_2783 at 2933.210 kb on + strand, within HP15_2783 at 2933.213 kb on - strand, within HP15_2783 at 2933.221 kb on + strand, within HP15_2783 at 2933.229 kb on - strand, within HP15_2783 at 2933.229 kb on - strand, within HP15_2783 at 2933.249 kb on + strand at 2933.560 kb on + strand, within HP15_2784 at 2933.659 kb on - strand, within HP15_2784 at 2933.712 kb on + strand, within HP15_2784 at 2933.754 kb on + strand, within HP15_2784 at 2933.814 kb on + strand, within HP15_2784 at 2933.814 kb on + strand, within HP15_2784 at 2933.822 kb on - strand, within HP15_2784 at 2933.822 kb on - strand, within HP15_2784 at 2933.822 kb on - strand, within HP15_2784 at 2933.975 kb on + strand, within HP15_2784 at 2934.032 kb on - strand, within HP15_2784 at 2934.053 kb on + strand, within HP15_2784 at 2934.414 kb on - strand at 2934.416 kb on + strand at 2934.498 kb on + strand, within HP15_2785 at 2934.506 kb on - strand, within HP15_2785 at 2934.516 kb on + strand, within HP15_2785 at 2934.538 kb on + strand, within HP15_2785 at 2934.670 kb on - strand, within HP15_2785 at 2934.760 kb on - strand, within HP15_2785 at 2934.775 kb on - strand, within HP15_2785 at 2934.788 kb on - strand, within HP15_2785 at 2934.861 kb on - strand, within HP15_2785 at 2934.893 kb on + strand, within HP15_2785 at 2934.893 kb on + strand, within HP15_2785 at 2934.893 kb on + strand, within HP15_2785 at 2934.893 kb on + strand, within HP15_2785 at 2934.901 kb on - strand, within HP15_2785 at 2935.035 kb on + strand, within HP15_2785 at 2935.095 kb on - strand, within HP15_2785 at 2935.095 kb on - strand, within HP15_2785 at 2935.095 kb on - strand, within HP15_2785 at 2935.100 kb on - strand, within HP15_2785 at 2935.196 kb on + strand, within HP15_2785
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 2,932,499 + HP15_2783 0.29 +0.9 2,932,577 - HP15_2783 0.35 -2.1 2,932,841 + HP15_2783 0.57 -0.4 2,932,969 - HP15_2783 0.68 -0.2 2,932,969 - HP15_2783 0.68 +1.7 2,932,969 - HP15_2783 0.68 +1.6 2,932,969 - HP15_2783 0.68 +0.1 2,932,969 - HP15_2783 0.68 +1.3 2,932,984 - HP15_2783 0.69 -0.1 2,933,042 - HP15_2783 0.74 -0.3 2,933,065 + HP15_2783 0.75 -2.1 2,933,068 - HP15_2783 0.76 -0.1 2,933,068 - HP15_2783 0.76 -0.8 2,933,105 + HP15_2783 0.79 -1.6 2,933,108 - HP15_2783 0.79 -0.3 2,933,210 + HP15_2783 0.87 +0.3 2,933,213 - HP15_2783 0.88 +0.4 2,933,221 + HP15_2783 0.88 +0.5 2,933,229 - HP15_2783 0.89 -0.3 2,933,229 - HP15_2783 0.89 +0.8 2,933,249 + -1.4 2,933,560 + HP15_2784 0.12 -0.0 2,933,659 - HP15_2784 0.25 -0.0 2,933,712 + HP15_2784 0.32 +1.6 2,933,754 + HP15_2784 0.38 +1.3 2,933,814 + HP15_2784 0.46 +1.5 2,933,814 + HP15_2784 0.46 -0.1 2,933,822 - HP15_2784 0.47 -0.8 2,933,822 - HP15_2784 0.47 -1.9 2,933,822 - HP15_2784 0.47 -1.1 2,933,975 + HP15_2784 0.68 -1.5 2,934,032 - HP15_2784 0.75 -0.9 2,934,053 + HP15_2784 0.78 -0.9 2,934,414 - -0.1 2,934,416 + -0.3 2,934,498 + HP15_2785 0.14 +1.2 2,934,506 - HP15_2785 0.14 -0.5 2,934,516 + HP15_2785 0.14 +0.0 2,934,538 + HP15_2785 0.16 -0.1 2,934,670 - HP15_2785 0.23 -0.3 2,934,760 - HP15_2785 0.27 +0.1 2,934,775 - HP15_2785 0.28 -0.1 2,934,788 - HP15_2785 0.29 -0.9 2,934,861 - HP15_2785 0.33 -0.8 2,934,893 + HP15_2785 0.34 +0.2 2,934,893 + HP15_2785 0.34 -0.2 2,934,893 + HP15_2785 0.34 -0.2 2,934,893 + HP15_2785 0.34 -0.1 2,934,901 - HP15_2785 0.35 -0.6 2,935,035 + HP15_2785 0.42 -0.1 2,935,095 - HP15_2785 0.45 +1.8 2,935,095 - HP15_2785 0.45 -0.3 2,935,095 - HP15_2785 0.45 -1.8 2,935,100 - HP15_2785 0.45 -0.6 2,935,196 + HP15_2785 0.50 +1.7
Or see this region's nucleotide sequence