Strain Fitness in Marinobacter adhaerens HP15 around HP15_2147

Experiment: L-Alanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2145 and HP15_2146 are separated by 89 nucleotidesHP15_2146 and HP15_2147 are separated by 22 nucleotidesHP15_2147 and HP15_2148 are separated by 311 nucleotidesHP15_2148 and HP15_2149 overlap by 6 nucleotides HP15_2145: HP15_2145 - conserved hypothetical protein, at 2,247,191 to 2,247,715 _2145 HP15_2146: HP15_2146 - conserved hypothetical protein, secreted, at 2,247,805 to 2,248,557 _2146 HP15_2147: HP15_2147 - conserved hypothetical protein, at 2,248,580 to 2,251,117 _2147 HP15_2148: HP15_2148 - hypothetical protein, at 2,251,429 to 2,251,683 _2148 HP15_2149: HP15_2149 - conserved hypothetical protein, at 2,251,678 to 2,252,688 _2149 Position (kb) 2248 2249 2250 2251 2252Strain fitness (log2 ratio) -1 0 1 2at 2247.595 kb on + strand, within HP15_2145at 2247.697 kb on + strandat 2247.784 kb on - strandat 2247.880 kb on + strandat 2247.944 kb on - strand, within HP15_2146at 2247.979 kb on - strand, within HP15_2146at 2248.006 kb on - strand, within HP15_2146at 2248.038 kb on - strand, within HP15_2146at 2248.110 kb on - strand, within HP15_2146at 2248.137 kb on + strand, within HP15_2146at 2248.158 kb on - strand, within HP15_2146at 2248.273 kb on - strand, within HP15_2146at 2248.305 kb on - strand, within HP15_2146at 2248.493 kb on - strandat 2248.518 kb on - strandat 2248.518 kb on - strandat 2248.769 kb on - strandat 2248.903 kb on - strand, within HP15_2147at 2248.903 kb on - strand, within HP15_2147at 2248.919 kb on - strand, within HP15_2147at 2248.927 kb on - strand, within HP15_2147at 2248.943 kb on - strand, within HP15_2147at 2249.029 kb on - strand, within HP15_2147at 2249.048 kb on - strand, within HP15_2147at 2249.098 kb on + strand, within HP15_2147at 2249.111 kb on - strand, within HP15_2147at 2249.291 kb on + strand, within HP15_2147at 2249.299 kb on - strand, within HP15_2147at 2249.299 kb on - strand, within HP15_2147at 2249.303 kb on + strand, within HP15_2147at 2249.405 kb on + strand, within HP15_2147at 2249.413 kb on + strand, within HP15_2147at 2249.421 kb on - strand, within HP15_2147at 2249.446 kb on + strand, within HP15_2147at 2249.611 kb on + strand, within HP15_2147at 2249.808 kb on + strand, within HP15_2147at 2249.816 kb on + strand, within HP15_2147at 2250.028 kb on - strand, within HP15_2147at 2250.196 kb on - strand, within HP15_2147at 2250.312 kb on - strand, within HP15_2147at 2250.410 kb on + strand, within HP15_2147at 2250.410 kb on + strand, within HP15_2147at 2250.415 kb on + strand, within HP15_2147at 2250.415 kb on + strand, within HP15_2147at 2250.423 kb on - strand, within HP15_2147at 2250.475 kb on + strand, within HP15_2147at 2250.544 kb on - strand, within HP15_2147at 2250.582 kb on + strand, within HP15_2147at 2250.882 kb on - strandat 2251.071 kb on - strandat 2251.222 kb on + strandat 2251.326 kb on - strandat 2251.326 kb on - strandat 2251.341 kb on + strandat 2251.449 kb on + strandat 2251.457 kb on - strand, within HP15_2148at 2251.533 kb on + strand, within HP15_2148at 2251.538 kb on + strand, within HP15_2148at 2251.541 kb on - strand, within HP15_2148at 2251.556 kb on - strand, within HP15_2148at 2251.619 kb on - strand, within HP15_2148at 2251.686 kb on - strandat 2251.957 kb on - strand, within HP15_2149at 2252.031 kb on + strand, within HP15_2149

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine as (N)
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2,247,595 + HP15_2145 0.77 +1.3
2,247,697 + -0.2
2,247,784 - +0.2
2,247,880 + -0.4
2,247,944 - HP15_2146 0.18 -0.8
2,247,979 - HP15_2146 0.23 -0.5
2,248,006 - HP15_2146 0.27 +2.7
2,248,038 - HP15_2146 0.31 +0.0
2,248,110 - HP15_2146 0.41 -0.2
2,248,137 + HP15_2146 0.44 -0.7
2,248,158 - HP15_2146 0.47 -0.5
2,248,273 - HP15_2146 0.62 -0.4
2,248,305 - HP15_2146 0.66 -0.9
2,248,493 - +0.0
2,248,518 - -1.0
2,248,518 - +0.6
2,248,769 - -0.5
2,248,903 - HP15_2147 0.13 +0.7
2,248,903 - HP15_2147 0.13 +1.4
2,248,919 - HP15_2147 0.13 +0.1
2,248,927 - HP15_2147 0.14 +1.9
2,248,943 - HP15_2147 0.14 -0.2
2,249,029 - HP15_2147 0.18 +1.4
2,249,048 - HP15_2147 0.18 +1.2
2,249,098 + HP15_2147 0.20 +1.6
2,249,111 - HP15_2147 0.21 +2.2
2,249,291 + HP15_2147 0.28 +1.6
2,249,299 - HP15_2147 0.28 +0.7
2,249,299 - HP15_2147 0.28 -0.6
2,249,303 + HP15_2147 0.28 +1.3
2,249,405 + HP15_2147 0.33 +1.4
2,249,413 + HP15_2147 0.33 -0.3
2,249,421 - HP15_2147 0.33 +0.5
2,249,446 + HP15_2147 0.34 +0.5
2,249,611 + HP15_2147 0.41 +0.6
2,249,808 + HP15_2147 0.48 +0.2
2,249,816 + HP15_2147 0.49 +2.2
2,250,028 - HP15_2147 0.57 -0.4
2,250,196 - HP15_2147 0.64 +2.5
2,250,312 - HP15_2147 0.68 +1.4
2,250,410 + HP15_2147 0.72 +0.1
2,250,410 + HP15_2147 0.72 +0.3
2,250,415 + HP15_2147 0.72 -1.0
2,250,415 + HP15_2147 0.72 +0.7
2,250,423 - HP15_2147 0.73 +1.6
2,250,475 + HP15_2147 0.75 +1.5
2,250,544 - HP15_2147 0.77 -0.5
2,250,582 + HP15_2147 0.79 +1.3
2,250,882 - +0.2
2,251,071 - +1.3
2,251,222 + +1.6
2,251,326 - -0.2
2,251,326 - -0.6
2,251,341 + -1.6
2,251,449 + -0.8
2,251,457 - HP15_2148 0.11 +0.4
2,251,533 + HP15_2148 0.41 -0.3
2,251,538 + HP15_2148 0.43 -0.4
2,251,541 - HP15_2148 0.44 -0.7
2,251,556 - HP15_2148 0.50 -0.3
2,251,619 - HP15_2148 0.75 -0.7
2,251,686 - -0.4
2,251,957 - HP15_2149 0.28 -0.3
2,252,031 + HP15_2149 0.35 -0.7

Or see this region's nucleotide sequence