Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2145 and HP15_2146 are separated by 89 nucleotides HP15_2146 and HP15_2147 are separated by 22 nucleotides HP15_2147 and HP15_2148 are separated by 311 nucleotides HP15_2148 and HP15_2149 overlap by 6 nucleotides
HP15_2145: HP15_2145 - conserved hypothetical protein, at 2,247,191 to 2,247,715
_2145
HP15_2146: HP15_2146 - conserved hypothetical protein, secreted, at 2,247,805 to 2,248,557
_2146
HP15_2147: HP15_2147 - conserved hypothetical protein, at 2,248,580 to 2,251,117
_2147
HP15_2148: HP15_2148 - hypothetical protein, at 2,251,429 to 2,251,683
_2148
HP15_2149: HP15_2149 - conserved hypothetical protein, at 2,251,678 to 2,252,688
_2149
Position (kb)
2248
2249
2250
2251
2252 Strain fitness (log2 ratio)
-1
0
1
2 at 2247.595 kb on + strand, within HP15_2145 at 2247.697 kb on + strand at 2247.784 kb on - strand at 2247.880 kb on + strand at 2247.944 kb on - strand, within HP15_2146 at 2247.979 kb on - strand, within HP15_2146 at 2248.006 kb on - strand, within HP15_2146 at 2248.038 kb on - strand, within HP15_2146 at 2248.110 kb on - strand, within HP15_2146 at 2248.137 kb on + strand, within HP15_2146 at 2248.158 kb on - strand, within HP15_2146 at 2248.273 kb on - strand, within HP15_2146 at 2248.305 kb on - strand, within HP15_2146 at 2248.493 kb on - strand at 2248.518 kb on - strand at 2248.518 kb on - strand at 2248.769 kb on - strand at 2248.903 kb on - strand, within HP15_2147 at 2248.903 kb on - strand, within HP15_2147 at 2248.919 kb on - strand, within HP15_2147 at 2248.927 kb on - strand, within HP15_2147 at 2248.943 kb on - strand, within HP15_2147 at 2249.029 kb on - strand, within HP15_2147 at 2249.048 kb on - strand, within HP15_2147 at 2249.098 kb on + strand, within HP15_2147 at 2249.111 kb on - strand, within HP15_2147 at 2249.291 kb on + strand, within HP15_2147 at 2249.299 kb on - strand, within HP15_2147 at 2249.299 kb on - strand, within HP15_2147 at 2249.303 kb on + strand, within HP15_2147 at 2249.405 kb on + strand, within HP15_2147 at 2249.413 kb on + strand, within HP15_2147 at 2249.421 kb on - strand, within HP15_2147 at 2249.446 kb on + strand, within HP15_2147 at 2249.611 kb on + strand, within HP15_2147 at 2249.808 kb on + strand, within HP15_2147 at 2249.816 kb on + strand, within HP15_2147 at 2250.028 kb on - strand, within HP15_2147 at 2250.196 kb on - strand, within HP15_2147 at 2250.312 kb on - strand, within HP15_2147 at 2250.410 kb on + strand, within HP15_2147 at 2250.410 kb on + strand, within HP15_2147 at 2250.415 kb on + strand, within HP15_2147 at 2250.415 kb on + strand, within HP15_2147 at 2250.423 kb on - strand, within HP15_2147 at 2250.475 kb on + strand, within HP15_2147 at 2250.544 kb on - strand, within HP15_2147 at 2250.582 kb on + strand, within HP15_2147 at 2250.882 kb on - strand at 2251.071 kb on - strand at 2251.222 kb on + strand at 2251.326 kb on - strand at 2251.326 kb on - strand at 2251.341 kb on + strand at 2251.449 kb on + strand at 2251.457 kb on - strand, within HP15_2148 at 2251.533 kb on + strand, within HP15_2148 at 2251.538 kb on + strand, within HP15_2148 at 2251.541 kb on - strand, within HP15_2148 at 2251.556 kb on - strand, within HP15_2148 at 2251.619 kb on - strand, within HP15_2148 at 2251.686 kb on - strand at 2251.957 kb on - strand, within HP15_2149 at 2252.031 kb on + strand, within HP15_2149
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 2,247,595 + HP15_2145 0.77 +1.3 2,247,697 + -0.2 2,247,784 - +0.2 2,247,880 + -0.4 2,247,944 - HP15_2146 0.18 -0.8 2,247,979 - HP15_2146 0.23 -0.5 2,248,006 - HP15_2146 0.27 +2.7 2,248,038 - HP15_2146 0.31 +0.0 2,248,110 - HP15_2146 0.41 -0.2 2,248,137 + HP15_2146 0.44 -0.7 2,248,158 - HP15_2146 0.47 -0.5 2,248,273 - HP15_2146 0.62 -0.4 2,248,305 - HP15_2146 0.66 -0.9 2,248,493 - +0.0 2,248,518 - -1.0 2,248,518 - +0.6 2,248,769 - -0.5 2,248,903 - HP15_2147 0.13 +0.7 2,248,903 - HP15_2147 0.13 +1.4 2,248,919 - HP15_2147 0.13 +0.1 2,248,927 - HP15_2147 0.14 +1.9 2,248,943 - HP15_2147 0.14 -0.2 2,249,029 - HP15_2147 0.18 +1.4 2,249,048 - HP15_2147 0.18 +1.2 2,249,098 + HP15_2147 0.20 +1.6 2,249,111 - HP15_2147 0.21 +2.2 2,249,291 + HP15_2147 0.28 +1.6 2,249,299 - HP15_2147 0.28 +0.7 2,249,299 - HP15_2147 0.28 -0.6 2,249,303 + HP15_2147 0.28 +1.3 2,249,405 + HP15_2147 0.33 +1.4 2,249,413 + HP15_2147 0.33 -0.3 2,249,421 - HP15_2147 0.33 +0.5 2,249,446 + HP15_2147 0.34 +0.5 2,249,611 + HP15_2147 0.41 +0.6 2,249,808 + HP15_2147 0.48 +0.2 2,249,816 + HP15_2147 0.49 +2.2 2,250,028 - HP15_2147 0.57 -0.4 2,250,196 - HP15_2147 0.64 +2.5 2,250,312 - HP15_2147 0.68 +1.4 2,250,410 + HP15_2147 0.72 +0.1 2,250,410 + HP15_2147 0.72 +0.3 2,250,415 + HP15_2147 0.72 -1.0 2,250,415 + HP15_2147 0.72 +0.7 2,250,423 - HP15_2147 0.73 +1.6 2,250,475 + HP15_2147 0.75 +1.5 2,250,544 - HP15_2147 0.77 -0.5 2,250,582 + HP15_2147 0.79 +1.3 2,250,882 - +0.2 2,251,071 - +1.3 2,251,222 + +1.6 2,251,326 - -0.2 2,251,326 - -0.6 2,251,341 + -1.6 2,251,449 + -0.8 2,251,457 - HP15_2148 0.11 +0.4 2,251,533 + HP15_2148 0.41 -0.3 2,251,538 + HP15_2148 0.43 -0.4 2,251,541 - HP15_2148 0.44 -0.7 2,251,556 - HP15_2148 0.50 -0.3 2,251,619 - HP15_2148 0.75 -0.7 2,251,686 - -0.4 2,251,957 - HP15_2149 0.28 -0.3 2,252,031 + HP15_2149 0.35 -0.7
Or see this region's nucleotide sequence