Strain Fitness in Marinobacter adhaerens HP15 around HP15_1909

Experiment: L-Alanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1907 and HP15_1908 are separated by 6 nucleotidesHP15_1908 and HP15_1909 are separated by 3 nucleotidesHP15_1909 and HP15_1910 are separated by 455 nucleotides HP15_1907: HP15_1907 - coenzyme F390 synthetase-like protein, at 2,017,789 to 2,019,153 _1907 HP15_1908: HP15_1908 - glycosyl transferase, family 2, at 2,019,160 to 2,020,089 _1908 HP15_1909: HP15_1909 - fibronectin, type III domain protein-like protein, at 2,020,093 to 2,021,283 _1909 HP15_1910: HP15_1910 - TPR/glycosyl transferase domain protein, at 2,021,739 to 2,023,139 _1910 Position (kb) 2020 2021 2022Strain fitness (log2 ratio) -2 -1 0 1 2at 2019.142 kb on + strandat 2019.315 kb on + strand, within HP15_1908at 2019.364 kb on + strand, within HP15_1908at 2019.372 kb on - strand, within HP15_1908at 2019.489 kb on + strand, within HP15_1908at 2019.582 kb on + strand, within HP15_1908at 2019.582 kb on + strand, within HP15_1908at 2019.593 kb on + strand, within HP15_1908at 2019.685 kb on - strand, within HP15_1908at 2019.729 kb on - strand, within HP15_1908at 2019.827 kb on - strand, within HP15_1908at 2019.864 kb on + strand, within HP15_1908at 2019.907 kb on - strand, within HP15_1908at 2019.990 kb on - strand, within HP15_1908at 2020.117 kb on - strandat 2020.828 kb on - strand, within HP15_1909at 2021.037 kb on + strand, within HP15_1909at 2021.329 kb on + strandat 2021.420 kb on + strandat 2021.428 kb on - strandat 2021.491 kb on - strandat 2021.560 kb on - strandat 2021.595 kb on - strandat 2021.772 kb on + strandat 2021.950 kb on - strand, within HP15_1910at 2022.069 kb on - strand, within HP15_1910at 2022.163 kb on + strand, within HP15_1910at 2022.273 kb on - strand, within HP15_1910

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine as (N)
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2,019,142 + -2.5
2,019,315 + HP15_1908 0.17 +2.2
2,019,364 + HP15_1908 0.22 +1.6
2,019,372 - HP15_1908 0.23 -1.3
2,019,489 + HP15_1908 0.35 -0.7
2,019,582 + HP15_1908 0.45 -1.2
2,019,582 + HP15_1908 0.45 -0.2
2,019,593 + HP15_1908 0.47 +1.5
2,019,685 - HP15_1908 0.56 -0.6
2,019,729 - HP15_1908 0.61 +1.3
2,019,827 - HP15_1908 0.72 +2.5
2,019,864 + HP15_1908 0.76 +2.3
2,019,907 - HP15_1908 0.80 +0.9
2,019,990 - HP15_1908 0.89 +1.5
2,020,117 - -1.7
2,020,828 - HP15_1909 0.62 -2.2
2,021,037 + HP15_1909 0.79 -2.1
2,021,329 + +0.1
2,021,420 + +0.2
2,021,428 - -0.2
2,021,491 - +0.7
2,021,560 - +2.3
2,021,595 - +1.8
2,021,772 + +1.4
2,021,950 - HP15_1910 0.15 +1.5
2,022,069 - HP15_1910 0.24 -0.4
2,022,163 + HP15_1910 0.30 +0.4
2,022,273 - HP15_1910 0.38 -0.9

Or see this region's nucleotide sequence