Experiment: L-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1905 and HP15_1906 are separated by 1 nucleotides HP15_1906 and HP15_1907 are separated by 1 nucleotides HP15_1907 and HP15_1908 are separated by 6 nucleotides HP15_1908 and HP15_1909 are separated by 3 nucleotides
HP15_1905: HP15_1905 - conserved hypothetical protein, at 2,014,616 to 2,017,165
_1905
HP15_1906: HP15_1906 - acetyltransferase-like protein, at 2,017,167 to 2,017,787
_1906
HP15_1907: HP15_1907 - coenzyme F390 synthetase-like protein, at 2,017,789 to 2,019,153
_1907
HP15_1908: HP15_1908 - glycosyl transferase, family 2, at 2,019,160 to 2,020,089
_1908
HP15_1909: HP15_1909 - fibronectin, type III domain protein-like protein, at 2,020,093 to 2,021,283
_1909
Position (kb)
2017
2018
2019
2020 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2016.916 kb on - strand at 2017.012 kb on - strand at 2017.040 kb on + strand at 2017.064 kb on - strand at 2017.432 kb on + strand, within HP15_1906 at 2017.501 kb on + strand, within HP15_1906 at 2017.553 kb on - strand, within HP15_1906 at 2017.657 kb on - strand, within HP15_1906 at 2017.662 kb on - strand, within HP15_1906 at 2017.662 kb on - strand, within HP15_1906 at 2017.672 kb on - strand, within HP15_1906 at 2017.674 kb on + strand, within HP15_1906 at 2017.674 kb on + strand, within HP15_1906 at 2017.692 kb on - strand, within HP15_1906 at 2017.750 kb on - strand at 2017.843 kb on + strand at 2017.882 kb on - strand at 2017.913 kb on - strand at 2017.940 kb on - strand, within HP15_1907 at 2018.110 kb on - strand, within HP15_1907 at 2018.130 kb on + strand, within HP15_1907 at 2018.191 kb on + strand, within HP15_1907 at 2018.191 kb on + strand, within HP15_1907 at 2018.191 kb on + strand, within HP15_1907 at 2018.196 kb on + strand, within HP15_1907 at 2018.196 kb on + strand, within HP15_1907 at 2018.340 kb on + strand, within HP15_1907 at 2018.835 kb on + strand, within HP15_1907 at 2019.058 kb on + strand at 2019.142 kb on + strand at 2019.315 kb on + strand, within HP15_1908 at 2019.364 kb on + strand, within HP15_1908 at 2019.372 kb on - strand, within HP15_1908 at 2019.489 kb on + strand, within HP15_1908 at 2019.582 kb on + strand, within HP15_1908 at 2019.582 kb on + strand, within HP15_1908 at 2019.593 kb on + strand, within HP15_1908 at 2019.685 kb on - strand, within HP15_1908 at 2019.729 kb on - strand, within HP15_1908 at 2019.827 kb on - strand, within HP15_1908 at 2019.864 kb on + strand, within HP15_1908 at 2019.907 kb on - strand, within HP15_1908 at 2019.990 kb on - strand, within HP15_1908 at 2020.117 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine as (N) remove 2,016,916 - +0.4 2,017,012 - +1.8 2,017,040 + +1.5 2,017,064 - -0.7 2,017,432 + HP15_1906 0.43 -0.4 2,017,501 + HP15_1906 0.54 +1.6 2,017,553 - HP15_1906 0.62 -0.3 2,017,657 - HP15_1906 0.79 +0.1 2,017,662 - HP15_1906 0.80 -0.9 2,017,662 - HP15_1906 0.80 -0.0 2,017,672 - HP15_1906 0.81 +1.9 2,017,674 + HP15_1906 0.82 +1.8 2,017,674 + HP15_1906 0.82 -0.2 2,017,692 - HP15_1906 0.85 +0.9 2,017,750 - -0.3 2,017,843 + -0.4 2,017,882 - +1.2 2,017,913 - +1.0 2,017,940 - HP15_1907 0.11 +1.1 2,018,110 - HP15_1907 0.24 +1.5 2,018,130 + HP15_1907 0.25 -1.8 2,018,191 + HP15_1907 0.29 +0.9 2,018,191 + HP15_1907 0.29 +0.9 2,018,191 + HP15_1907 0.29 +1.2 2,018,196 + HP15_1907 0.30 -2.3 2,018,196 + HP15_1907 0.30 -2.3 2,018,340 + HP15_1907 0.40 -1.9 2,018,835 + HP15_1907 0.77 -2.0 2,019,058 + -2.2 2,019,142 + -2.5 2,019,315 + HP15_1908 0.17 +2.2 2,019,364 + HP15_1908 0.22 +1.6 2,019,372 - HP15_1908 0.23 -1.3 2,019,489 + HP15_1908 0.35 -0.7 2,019,582 + HP15_1908 0.45 -1.2 2,019,582 + HP15_1908 0.45 -0.2 2,019,593 + HP15_1908 0.47 +1.5 2,019,685 - HP15_1908 0.56 -0.6 2,019,729 - HP15_1908 0.61 +1.3 2,019,827 - HP15_1908 0.72 +2.5 2,019,864 + HP15_1908 0.76 +2.3 2,019,907 - HP15_1908 0.80 +0.9 2,019,990 - HP15_1908 0.89 +1.5 2,020,117 - -1.7
Or see this region's nucleotide sequence