Strain Fitness in Marinobacter adhaerens HP15 around HP15_1876

Experiment: L-Alanine as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1875 and HP15_1876 are separated by 72 nucleotidesHP15_1876 and HP15_1877 are separated by 17 nucleotidesHP15_1877 and HP15_1878 are separated by 23 nucleotides HP15_1875: HP15_1875 - conserved hypothetical protein, at 1,980,980 to 1,982,119 _1875 HP15_1876: HP15_1876 - ATPase associated with various cellular activities AAA_5, at 1,982,192 to 1,983,034 _1876 HP15_1877: HP15_1877 - hypothetical protein, at 1,983,052 to 1,983,405 _1877 HP15_1878: HP15_1878 - von Willebrand factor, type A, at 1,983,429 to 1,985,174 _1878 Position (kb) 1982 1983 1984Strain fitness (log2 ratio) -1 0 1 2at 1981.423 kb on + strand, within HP15_1875at 1981.467 kb on + strand, within HP15_1875at 1981.475 kb on - strand, within HP15_1875at 1981.634 kb on + strand, within HP15_1875at 1981.834 kb on + strand, within HP15_1875at 1981.834 kb on + strand, within HP15_1875at 1981.834 kb on + strand, within HP15_1875at 1981.842 kb on - strand, within HP15_1875at 1981.842 kb on - strand, within HP15_1875at 1981.842 kb on - strand, within HP15_1875at 1981.946 kb on - strand, within HP15_1875at 1982.015 kb on - strandat 1982.016 kb on + strandat 1982.069 kb on + strandat 1982.247 kb on - strandat 1982.395 kb on - strand, within HP15_1876at 1982.396 kb on - strand, within HP15_1876at 1982.486 kb on + strand, within HP15_1876at 1982.719 kb on + strand, within HP15_1876at 1983.288 kb on + strand, within HP15_1877at 1983.709 kb on - strand, within HP15_1878at 1983.815 kb on + strand, within HP15_1878at 1983.832 kb on - strand, within HP15_1878at 1983.869 kb on + strand, within HP15_1878at 1983.950 kb on + strand, within HP15_1878at 1983.958 kb on + strand, within HP15_1878at 1983.966 kb on - strand, within HP15_1878at 1983.966 kb on - strand, within HP15_1878

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine as (N)
remove
1,981,423 + HP15_1875 0.39 -0.7
1,981,467 + HP15_1875 0.43 +1.4
1,981,475 - HP15_1875 0.43 +0.2
1,981,634 + HP15_1875 0.57 +1.7
1,981,834 + HP15_1875 0.75 +1.5
1,981,834 + HP15_1875 0.75 +0.3
1,981,834 + HP15_1875 0.75 -0.0
1,981,842 - HP15_1875 0.76 +1.1
1,981,842 - HP15_1875 0.76 -0.1
1,981,842 - HP15_1875 0.76 +1.6
1,981,946 - HP15_1875 0.85 +0.4
1,982,015 - +0.3
1,982,016 + +0.9
1,982,069 + +0.5
1,982,247 - +0.2
1,982,395 - HP15_1876 0.24 +0.4
1,982,396 - HP15_1876 0.24 +1.1
1,982,486 + HP15_1876 0.35 +2.5
1,982,719 + HP15_1876 0.63 -0.2
1,983,288 + HP15_1877 0.67 -0.6
1,983,709 - HP15_1878 0.16 -0.3
1,983,815 + HP15_1878 0.22 +0.7
1,983,832 - HP15_1878 0.23 +1.6
1,983,869 + HP15_1878 0.25 +0.6
1,983,950 + HP15_1878 0.30 -0.3
1,983,958 + HP15_1878 0.30 -1.6
1,983,966 - HP15_1878 0.31 -1.0
1,983,966 - HP15_1878 0.31 -0.4

Or see this region's nucleotide sequence