Strain Fitness in Marinobacter adhaerens HP15 around HP15_1596

Experiment: L-Alanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1594 and HP15_1595 overlap by 8 nucleotidesHP15_1595 and HP15_1596 are separated by 463 nucleotidesHP15_1596 and HP15_1597 overlap by 20 nucleotides HP15_1594: HP15_1594 - hypothetical protein, at 1,688,652 to 1,690,559 _1594 HP15_1595: HP15_1595 - hypothetical protein, at 1,690,552 to 1,690,821 _1595 HP15_1596: HP15_1596 - D-amino acid dehydrogenase 2 small subunit, at 1,691,285 to 1,692,505 _1596 HP15_1597: HP15_1597 - carbohydrate kinase, FGGY, at 1,692,486 to 1,694,045 _1597 Position (kb) 1691 1692 1693Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1690.309 kb on - strand, within HP15_1594at 1690.389 kb on + strandat 1690.452 kb on - strandat 1690.454 kb on - strandat 1690.523 kb on + strandat 1690.639 kb on + strand, within HP15_1595at 1690.822 kb on - strandat 1690.903 kb on - strandat 1690.994 kb on + strandat 1690.994 kb on + strandat 1690.994 kb on + strandat 1690.994 kb on + strandat 1691.002 kb on - strandat 1691.002 kb on - strandat 1691.002 kb on - strandat 1691.099 kb on + strandat 1691.208 kb on + strandat 1691.312 kb on + strandat 1691.333 kb on + strandat 1691.333 kb on + strandat 1691.341 kb on - strandat 1691.355 kb on + strandat 1691.404 kb on - strandat 1691.446 kb on + strand, within HP15_1596at 1691.478 kb on - strand, within HP15_1596at 1691.528 kb on - strand, within HP15_1596at 1691.585 kb on + strand, within HP15_1596at 1691.593 kb on - strand, within HP15_1596at 1691.792 kb on - strand, within HP15_1596at 1691.972 kb on + strand, within HP15_1596at 1692.034 kb on - strand, within HP15_1596at 1692.293 kb on - strand, within HP15_1596at 1692.335 kb on + strand, within HP15_1596at 1692.343 kb on - strand, within HP15_1596at 1692.385 kb on + strandat 1692.462 kb on + strandat 1692.467 kb on + strandat 1692.469 kb on + strandat 1692.529 kb on + strandat 1692.541 kb on + strandat 1692.665 kb on + strand, within HP15_1597at 1692.673 kb on - strand, within HP15_1597at 1692.875 kb on - strand, within HP15_1597at 1692.906 kb on + strand, within HP15_1597at 1692.914 kb on - strand, within HP15_1597at 1692.914 kb on - strand, within HP15_1597at 1693.018 kb on + strand, within HP15_1597at 1693.018 kb on + strand, within HP15_1597at 1693.026 kb on - strand, within HP15_1597at 1693.026 kb on - strand, within HP15_1597at 1693.026 kb on - strand, within HP15_1597at 1693.026 kb on - strand, within HP15_1597at 1693.135 kb on + strand, within HP15_1597at 1693.143 kb on - strand, within HP15_1597at 1693.204 kb on + strand, within HP15_1597at 1693.344 kb on + strand, within HP15_1597at 1693.382 kb on + strand, within HP15_1597

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine as (N)
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1,690,309 - HP15_1594 0.87 -0.3
1,690,389 + -0.2
1,690,452 - +0.4
1,690,454 - -0.3
1,690,523 + -0.2
1,690,639 + HP15_1595 0.32 +0.1
1,690,822 - +1.6
1,690,903 - -0.9
1,690,994 + -1.0
1,690,994 + -1.5
1,690,994 + +0.4
1,690,994 + -2.2
1,691,002 - -1.6
1,691,002 - -2.6
1,691,002 - -0.8
1,691,099 + +0.3
1,691,208 + +0.1
1,691,312 + +0.1
1,691,333 + -0.3
1,691,333 + -1.0
1,691,341 - -2.2
1,691,355 + -0.6
1,691,404 - -0.1
1,691,446 + HP15_1596 0.13 -2.2
1,691,478 - HP15_1596 0.16 -3.2
1,691,528 - HP15_1596 0.20 +0.1
1,691,585 + HP15_1596 0.25 -0.3
1,691,593 - HP15_1596 0.25 -2.4
1,691,792 - HP15_1596 0.42 -1.3
1,691,972 + HP15_1596 0.56 +0.3
1,692,034 - HP15_1596 0.61 -0.5
1,692,293 - HP15_1596 0.83 -0.9
1,692,335 + HP15_1596 0.86 -1.4
1,692,343 - HP15_1596 0.87 -2.6
1,692,385 + +0.7
1,692,462 + -0.7
1,692,467 + -0.2
1,692,469 + +2.1
1,692,529 + -0.5
1,692,541 + -0.7
1,692,665 + HP15_1597 0.11 -0.2
1,692,673 - HP15_1597 0.12 -0.6
1,692,875 - HP15_1597 0.25 -0.9
1,692,906 + HP15_1597 0.27 +1.9
1,692,914 - HP15_1597 0.27 -0.5
1,692,914 - HP15_1597 0.27 +2.1
1,693,018 + HP15_1597 0.34 +2.3
1,693,018 + HP15_1597 0.34 -0.0
1,693,026 - HP15_1597 0.35 +0.6
1,693,026 - HP15_1597 0.35 +1.3
1,693,026 - HP15_1597 0.35 +2.5
1,693,026 - HP15_1597 0.35 -0.8
1,693,135 + HP15_1597 0.42 +1.6
1,693,143 - HP15_1597 0.42 -0.1
1,693,204 + HP15_1597 0.46 +1.6
1,693,344 + HP15_1597 0.55 -0.1
1,693,382 + HP15_1597 0.57 -0.5

Or see this region's nucleotide sequence