Strain Fitness in Marinobacter adhaerens HP15 around HP15_15

Experiment: L-Alanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_13 and HP15_14 are separated by 38 nucleotidesHP15_14 and HP15_15 are separated by 319 nucleotidesHP15_15 and HP15_16 are separated by 7 nucleotidesHP15_16 and HP15_17 are separated by 663 nucleotides HP15_13: HP15_13 - short-chain dehydrogenase/reductase SDR, at 15,899 to 16,627 _13 HP15_14: HP15_14 - transcriptional regulator, TetR family, at 16,666 to 17,247 _14 HP15_15: HP15_15 - short chain dehydrogenase/reductase, at 17,567 to 18,214 _15 HP15_16: HP15_16 - glyoxalase/bleomycin resistance protein/dioxygenase-like protein, at 18,222 to 18,392 _16 HP15_17: HP15_17 - FAD-dependent oxidoreductase, at 19,056 to 20,900 _17 Position (kb) 17 18 19Strain fitness (log2 ratio) -1 0 1 2 3at 16.567 kb on + strandat 16.571 kb on - strandat 16.571 kb on - strandat 16.606 kb on + strandat 16.614 kb on - strandat 16.614 kb on - strandat 16.619 kb on + strandat 16.620 kb on + strandat 16.627 kb on - strandat 16.629 kb on - strandat 16.714 kb on - strandat 16.729 kb on - strand, within HP15_14at 16.729 kb on - strand, within HP15_14at 16.731 kb on + strand, within HP15_14at 16.731 kb on + strand, within HP15_14at 16.734 kb on - strand, within HP15_14at 16.795 kb on + strand, within HP15_14at 16.795 kb on + strand, within HP15_14at 17.048 kb on - strand, within HP15_14at 17.070 kb on + strand, within HP15_14at 17.089 kb on - strand, within HP15_14at 17.092 kb on + strand, within HP15_14at 17.100 kb on - strand, within HP15_14at 17.102 kb on + strand, within HP15_14at 17.227 kb on + strandat 17.227 kb on + strandat 17.391 kb on - strandat 17.455 kb on + strandat 17.460 kb on + strandat 17.486 kb on + strandat 17.486 kb on + strandat 17.494 kb on - strandat 17.494 kb on - strandat 17.505 kb on + strandat 17.519 kb on + strandat 17.627 kb on + strandat 17.627 kb on + strandat 17.629 kb on + strandat 17.635 kb on - strand, within HP15_15at 17.635 kb on - strand, within HP15_15at 17.637 kb on - strand, within HP15_15at 17.664 kb on + strand, within HP15_15at 17.667 kb on - strand, within HP15_15at 17.670 kb on + strand, within HP15_15at 17.673 kb on - strand, within HP15_15at 17.673 kb on - strand, within HP15_15at 17.676 kb on - strand, within HP15_15at 17.706 kb on + strand, within HP15_15at 17.706 kb on + strand, within HP15_15at 17.707 kb on + strand, within HP15_15at 17.745 kb on + strand, within HP15_15at 17.756 kb on - strand, within HP15_15at 17.770 kb on + strand, within HP15_15at 17.791 kb on + strand, within HP15_15at 17.803 kb on + strand, within HP15_15at 17.811 kb on - strand, within HP15_15at 17.929 kb on + strand, within HP15_15at 18.008 kb on + strand, within HP15_15at 18.008 kb on + strand, within HP15_15at 18.018 kb on - strand, within HP15_15at 18.028 kb on - strand, within HP15_15at 18.107 kb on + strand, within HP15_15at 18.115 kb on - strand, within HP15_15at 18.155 kb on + strandat 18.211 kb on - strandat 18.217 kb on + strandat 18.374 kb on + strand, within HP15_16at 18.374 kb on + strand, within HP15_16at 18.374 kb on + strand, within HP15_16at 18.379 kb on + strandat 18.382 kb on - strandat 18.382 kb on - strandat 18.382 kb on - strandat 18.384 kb on + strandat 18.392 kb on - strandat 18.392 kb on - strandat 18.392 kb on - strandat 18.426 kb on + strandat 18.434 kb on - strandat 18.434 kb on - strandat 18.445 kb on + strandat 18.459 kb on + strandat 18.466 kb on - strandat 18.466 kb on - strandat 18.466 kb on - strandat 18.556 kb on - strandat 18.577 kb on - strandat 18.596 kb on + strandat 18.615 kb on - strandat 18.673 kb on + strandat 18.694 kb on - strandat 18.761 kb on - strandat 18.773 kb on + strandat 18.774 kb on + strandat 18.785 kb on + strandat 18.787 kb on + strandat 18.798 kb on - strandat 18.938 kb on + strandat 19.063 kb on + strandat 19.141 kb on + strandat 19.150 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine as (N)
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16,567 + -0.0
16,571 - -0.2
16,571 - +0.4
16,606 + +1.7
16,614 - +1.5
16,614 - +0.1
16,619 + +0.1
16,620 + -0.2
16,627 - +1.9
16,629 - +1.6
16,714 - -0.3
16,729 - HP15_14 0.11 +0.4
16,729 - HP15_14 0.11 -0.3
16,731 + HP15_14 0.11 -0.2
16,731 + HP15_14 0.11 +1.4
16,734 - HP15_14 0.12 -1.0
16,795 + HP15_14 0.22 -0.3
16,795 + HP15_14 0.22 +1.4
17,048 - HP15_14 0.66 +0.1
17,070 + HP15_14 0.69 -0.2
17,089 - HP15_14 0.73 -0.1
17,092 + HP15_14 0.73 -1.5
17,100 - HP15_14 0.75 -0.6
17,102 + HP15_14 0.75 -0.5
17,227 + -1.2
17,227 + -1.1
17,391 - -1.5
17,455 + -1.2
17,460 + +0.2
17,486 + -0.6
17,486 + +1.0
17,494 - +1.6
17,494 - +0.3
17,505 + +0.0
17,519 + +1.7
17,627 + -0.5
17,627 + +0.5
17,629 + +1.5
17,635 - HP15_15 0.10 -0.3
17,635 - HP15_15 0.10 -0.6
17,637 - HP15_15 0.11 +0.5
17,664 + HP15_15 0.15 +0.9
17,667 - HP15_15 0.15 -0.6
17,670 + HP15_15 0.16 +1.9
17,673 - HP15_15 0.16 +0.3
17,673 - HP15_15 0.16 +1.6
17,676 - HP15_15 0.17 -0.3
17,706 + HP15_15 0.21 -1.4
17,706 + HP15_15 0.21 +0.3
17,707 + HP15_15 0.22 -0.3
17,745 + HP15_15 0.27 +1.5
17,756 - HP15_15 0.29 +2.1
17,770 + HP15_15 0.31 -0.9
17,791 + HP15_15 0.35 -0.0
17,803 + HP15_15 0.36 +1.3
17,811 - HP15_15 0.38 +0.4
17,929 + HP15_15 0.56 -0.7
18,008 + HP15_15 0.68 -0.1
18,008 + HP15_15 0.68 -0.4
18,018 - HP15_15 0.70 +2.8
18,028 - HP15_15 0.71 -0.7
18,107 + HP15_15 0.83 +2.5
18,115 - HP15_15 0.85 +0.3
18,155 + -0.9
18,211 - -0.5
18,217 + +0.0
18,374 + HP15_16 0.89 +1.0
18,374 + HP15_16 0.89 +1.7
18,374 + HP15_16 0.89 -0.4
18,379 + +1.9
18,382 - -0.6
18,382 - -0.2
18,382 - -0.6
18,384 + +0.8
18,392 - +1.6
18,392 - -1.5
18,392 - +2.0
18,426 + +1.4
18,434 - -0.5
18,434 - -0.9
18,445 + -0.0
18,459 + +0.5
18,466 - -0.6
18,466 - +1.0
18,466 - -1.0
18,556 - +0.1
18,577 - +1.5
18,596 + -0.1
18,615 - -0.4
18,673 + -0.8
18,694 - -0.5
18,761 - +0.4
18,773 + +0.5
18,774 + -1.4
18,785 + +0.3
18,787 + +1.6
18,798 - -0.5
18,938 + +1.6
19,063 + +1.0
19,141 + -0.2
19,150 + -0.4

Or see this region's nucleotide sequence