Experiment: defined media with 30 mM sodium lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3462 and Dsui_3463 are separated by 4 nucleotides Dsui_3463 and Dsui_3464 are separated by 2 nucleotides Dsui_3464 and Dsui_3465 are separated by 143 nucleotides
Dsui_3462: Dsui_3462 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 3,725,228 to 3,726,214
_3462
Dsui_3463: Dsui_3463 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 3,726,219 to 3,727,037
_3463
Dsui_3464: Dsui_3464 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 3,727,040 to 3,727,831
_3464
Dsui_3465: Dsui_3465 - signal transduction histidine kinase regulating C4-dicarboxylate transport system, at 3,727,975 to 3,729,807
_3465
Position (kb)
3726
3727
3728 Strain fitness (log2 ratio)
-1
0
1 at 3725.251 kb on - strand at 3725.313 kb on + strand at 3725.347 kb on + strand, within Dsui_3462 at 3725.397 kb on + strand, within Dsui_3462 at 3725.464 kb on - strand at 3725.503 kb on + strand, within Dsui_3462 at 3725.526 kb on - strand at 3725.526 kb on - strand, within Dsui_3462 at 3725.594 kb on - strand, within Dsui_3462 at 3725.624 kb on + strand, within Dsui_3462 at 3725.888 kb on + strand, within Dsui_3462 at 3725.968 kb on + strand at 3725.977 kb on - strand, within Dsui_3462 at 3726.019 kb on + strand, within Dsui_3462 at 3726.032 kb on - strand, within Dsui_3462 at 3726.049 kb on + strand, within Dsui_3462 at 3726.057 kb on - strand at 3726.062 kb on - strand, within Dsui_3462 at 3726.187 kb on + strand at 3726.246 kb on - strand at 3726.326 kb on + strand, within Dsui_3463 at 3726.329 kb on - strand, within Dsui_3463 at 3726.337 kb on + strand, within Dsui_3463 at 3726.454 kb on + strand, within Dsui_3463 at 3726.501 kb on - strand, within Dsui_3463 at 3726.538 kb on + strand, within Dsui_3463 at 3726.548 kb on + strand, within Dsui_3463 at 3726.556 kb on + strand, within Dsui_3463 at 3726.621 kb on + strand, within Dsui_3463 at 3726.723 kb on - strand at 3726.795 kb on + strand, within Dsui_3463 at 3726.804 kb on - strand, within Dsui_3463 at 3726.949 kb on + strand, within Dsui_3463 at 3727.026 kb on + strand at 3727.104 kb on - strand at 3727.578 kb on + strand, within Dsui_3464 at 3727.620 kb on + strand, within Dsui_3464 at 3727.632 kb on + strand, within Dsui_3464 at 3727.638 kb on + strand at 3727.665 kb on + strand, within Dsui_3464 at 3727.680 kb on - strand, within Dsui_3464 at 3727.711 kb on - strand, within Dsui_3464 at 3727.752 kb on + strand at 3727.789 kb on + strand at 3727.927 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate remove 3,725,251 - +0.5 3,725,313 + -1.1 3,725,347 + Dsui_3462 0.12 +0.1 3,725,397 + Dsui_3462 0.17 -0.2 3,725,464 - +1.1 3,725,503 + Dsui_3462 0.28 -0.4 3,725,526 - +0.5 3,725,526 - Dsui_3462 0.30 +0.4 3,725,594 - Dsui_3462 0.37 +1.1 3,725,624 + Dsui_3462 0.40 +0.5 3,725,888 + Dsui_3462 0.67 +0.0 3,725,968 + +1.1 3,725,977 - Dsui_3462 0.76 +0.4 3,726,019 + Dsui_3462 0.80 +0.1 3,726,032 - Dsui_3462 0.81 +1.1 3,726,049 + Dsui_3462 0.83 -0.5 3,726,057 - +0.1 3,726,062 - Dsui_3462 0.84 +0.5 3,726,187 + +0.5 3,726,246 - -0.9 3,726,326 + Dsui_3463 0.13 -0.8 3,726,329 - Dsui_3463 0.13 -0.2 3,726,337 + Dsui_3463 0.14 -0.6 3,726,454 + Dsui_3463 0.29 +0.3 3,726,501 - Dsui_3463 0.34 +0.9 3,726,538 + Dsui_3463 0.39 -0.7 3,726,548 + Dsui_3463 0.40 +0.1 3,726,556 + Dsui_3463 0.41 -1.2 3,726,621 + Dsui_3463 0.49 -1.0 3,726,723 - +0.1 3,726,795 + Dsui_3463 0.70 -1.4 3,726,804 - Dsui_3463 0.71 -0.4 3,726,949 + Dsui_3463 0.89 -1.0 3,727,026 + +0.3 3,727,104 - +0.5 3,727,578 + Dsui_3464 0.68 -0.2 3,727,620 + Dsui_3464 0.73 -0.0 3,727,632 + Dsui_3464 0.75 -0.3 3,727,638 + +0.8 3,727,665 + Dsui_3464 0.79 +0.4 3,727,680 - Dsui_3464 0.81 +0.9 3,727,711 - Dsui_3464 0.85 +0.5 3,727,752 + -1.3 3,727,789 + +0.1 3,727,927 - +0.2
Or see this region's nucleotide sequence