Strain Fitness in Dechlorosoma suillum PS around Dsui_3463

Experiment: defined media with 30 mM sodium lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3462 and Dsui_3463 are separated by 4 nucleotidesDsui_3463 and Dsui_3464 are separated by 2 nucleotidesDsui_3464 and Dsui_3465 are separated by 143 nucleotides Dsui_3462: Dsui_3462 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 3,725,228 to 3,726,214 _3462 Dsui_3463: Dsui_3463 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 3,726,219 to 3,727,037 _3463 Dsui_3464: Dsui_3464 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 3,727,040 to 3,727,831 _3464 Dsui_3465: Dsui_3465 - signal transduction histidine kinase regulating C4-dicarboxylate transport system, at 3,727,975 to 3,729,807 _3465 Position (kb) 3726 3727 3728Strain fitness (log2 ratio) -1 0 1at 3725.251 kb on - strandat 3725.313 kb on + strandat 3725.347 kb on + strand, within Dsui_3462at 3725.397 kb on + strand, within Dsui_3462at 3725.464 kb on - strandat 3725.503 kb on + strand, within Dsui_3462at 3725.526 kb on - strandat 3725.526 kb on - strand, within Dsui_3462at 3725.594 kb on - strand, within Dsui_3462at 3725.624 kb on + strand, within Dsui_3462at 3725.888 kb on + strand, within Dsui_3462at 3725.968 kb on + strandat 3725.977 kb on - strand, within Dsui_3462at 3726.019 kb on + strand, within Dsui_3462at 3726.032 kb on - strand, within Dsui_3462at 3726.049 kb on + strand, within Dsui_3462at 3726.057 kb on - strandat 3726.062 kb on - strand, within Dsui_3462at 3726.187 kb on + strandat 3726.246 kb on - strandat 3726.326 kb on + strand, within Dsui_3463at 3726.329 kb on - strand, within Dsui_3463at 3726.337 kb on + strand, within Dsui_3463at 3726.454 kb on + strand, within Dsui_3463at 3726.501 kb on - strand, within Dsui_3463at 3726.538 kb on + strand, within Dsui_3463at 3726.548 kb on + strand, within Dsui_3463at 3726.556 kb on + strand, within Dsui_3463at 3726.621 kb on + strand, within Dsui_3463at 3726.723 kb on - strandat 3726.795 kb on + strand, within Dsui_3463at 3726.804 kb on - strand, within Dsui_3463at 3726.949 kb on + strand, within Dsui_3463at 3727.026 kb on + strandat 3727.104 kb on - strandat 3727.578 kb on + strand, within Dsui_3464at 3727.620 kb on + strand, within Dsui_3464at 3727.632 kb on + strand, within Dsui_3464at 3727.638 kb on + strandat 3727.665 kb on + strand, within Dsui_3464at 3727.680 kb on - strand, within Dsui_3464at 3727.711 kb on - strand, within Dsui_3464at 3727.752 kb on + strandat 3727.789 kb on + strandat 3727.927 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
remove
3,725,251 - +0.5
3,725,313 + -1.1
3,725,347 + Dsui_3462 0.12 +0.1
3,725,397 + Dsui_3462 0.17 -0.2
3,725,464 - +1.1
3,725,503 + Dsui_3462 0.28 -0.4
3,725,526 - +0.5
3,725,526 - Dsui_3462 0.30 +0.4
3,725,594 - Dsui_3462 0.37 +1.1
3,725,624 + Dsui_3462 0.40 +0.5
3,725,888 + Dsui_3462 0.67 +0.0
3,725,968 + +1.1
3,725,977 - Dsui_3462 0.76 +0.4
3,726,019 + Dsui_3462 0.80 +0.1
3,726,032 - Dsui_3462 0.81 +1.1
3,726,049 + Dsui_3462 0.83 -0.5
3,726,057 - +0.1
3,726,062 - Dsui_3462 0.84 +0.5
3,726,187 + +0.5
3,726,246 - -0.9
3,726,326 + Dsui_3463 0.13 -0.8
3,726,329 - Dsui_3463 0.13 -0.2
3,726,337 + Dsui_3463 0.14 -0.6
3,726,454 + Dsui_3463 0.29 +0.3
3,726,501 - Dsui_3463 0.34 +0.9
3,726,538 + Dsui_3463 0.39 -0.7
3,726,548 + Dsui_3463 0.40 +0.1
3,726,556 + Dsui_3463 0.41 -1.2
3,726,621 + Dsui_3463 0.49 -1.0
3,726,723 - +0.1
3,726,795 + Dsui_3463 0.70 -1.4
3,726,804 - Dsui_3463 0.71 -0.4
3,726,949 + Dsui_3463 0.89 -1.0
3,727,026 + +0.3
3,727,104 - +0.5
3,727,578 + Dsui_3464 0.68 -0.2
3,727,620 + Dsui_3464 0.73 -0.0
3,727,632 + Dsui_3464 0.75 -0.3
3,727,638 + +0.8
3,727,665 + Dsui_3464 0.79 +0.4
3,727,680 - Dsui_3464 0.81 +0.9
3,727,711 - Dsui_3464 0.85 +0.5
3,727,752 + -1.3
3,727,789 + +0.1
3,727,927 - +0.2

Or see this region's nucleotide sequence