Experiment: defined media with 30 mM sodium lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3428 and Dsui_3429 are separated by 219 nucleotides Dsui_3429 and Dsui_3430 overlap by 1 nucleotides
Dsui_3428: Dsui_3428 - transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 3,678,707 to 3,679,666
_3428
Dsui_3429: Dsui_3429 - RND family efflux transporter, MFP subunit, at 3,679,886 to 3,681,043
_3429
Dsui_3430: Dsui_3430 - heavy metal efflux pump, cobalt-zinc-cadmium, at 3,681,043 to 3,684,129
_3430
Position (kb)
3679
3680
3681
3682 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3678.936 kb on - strand, within Dsui_3428 at 3678.963 kb on - strand at 3678.972 kb on + strand, within Dsui_3428 at 3679.111 kb on + strand at 3679.197 kb on + strand, within Dsui_3428 at 3679.295 kb on + strand at 3679.295 kb on + strand, within Dsui_3428 at 3679.303 kb on - strand at 3679.409 kb on + strand, within Dsui_3428 at 3679.423 kb on - strand at 3679.441 kb on - strand at 3679.608 kb on + strand at 3679.609 kb on + strand at 3679.661 kb on + strand at 3679.730 kb on + strand at 3679.787 kb on - strand at 3679.832 kb on - strand at 3679.857 kb on - strand at 3679.870 kb on + strand at 3679.878 kb on - strand at 3679.944 kb on - strand at 3679.956 kb on - strand at 3680.005 kb on + strand, within Dsui_3429 at 3680.005 kb on + strand, within Dsui_3429 at 3680.143 kb on + strand, within Dsui_3429 at 3680.347 kb on + strand, within Dsui_3429 at 3680.592 kb on - strand, within Dsui_3429 at 3680.603 kb on - strand, within Dsui_3429 at 3680.804 kb on + strand, within Dsui_3429 at 3680.804 kb on + strand, within Dsui_3429 at 3680.919 kb on + strand, within Dsui_3429 at 3681.062 kb on + strand at 3681.070 kb on - strand at 3681.147 kb on - strand at 3681.269 kb on + strand at 3681.269 kb on + strand at 3681.277 kb on - strand at 3681.348 kb on + strand at 3681.502 kb on + strand, within Dsui_3430 at 3681.502 kb on + strand, within Dsui_3430 at 3681.663 kb on - strand, within Dsui_3430 at 3681.726 kb on + strand, within Dsui_3430 at 3681.809 kb on + strand, within Dsui_3430 at 3681.860 kb on - strand at 3681.933 kb on + strand, within Dsui_3430 at 3681.933 kb on + strand, within Dsui_3430 at 3681.941 kb on - strand at 3681.977 kb on - strand at 3681.986 kb on - strand, within Dsui_3430
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate remove 3,678,936 - Dsui_3428 0.24 +0.8 3,678,963 - +1.4 3,678,972 + Dsui_3428 0.28 -0.9 3,679,111 + +2.1 3,679,197 + Dsui_3428 0.51 -0.3 3,679,295 + +0.5 3,679,295 + Dsui_3428 0.61 +0.3 3,679,303 - +2.1 3,679,409 + Dsui_3428 0.73 +0.2 3,679,423 - +0.1 3,679,441 - +3.7 3,679,608 + +0.7 3,679,609 + +1.3 3,679,661 + +0.5 3,679,730 + +0.5 3,679,787 - +1.5 3,679,832 - +2.1 3,679,857 - +1.1 3,679,870 + -0.5 3,679,878 - +1.4 3,679,944 - +1.1 3,679,956 - -0.5 3,680,005 + Dsui_3429 0.10 -0.2 3,680,005 + Dsui_3429 0.10 -0.5 3,680,143 + Dsui_3429 0.22 -0.7 3,680,347 + Dsui_3429 0.40 +0.5 3,680,592 - Dsui_3429 0.61 +0.5 3,680,603 - Dsui_3429 0.62 -0.5 3,680,804 + Dsui_3429 0.79 -1.2 3,680,804 + Dsui_3429 0.79 -0.5 3,680,919 + Dsui_3429 0.89 -0.5 3,681,062 + +1.1 3,681,070 - -1.2 3,681,147 - +2.1 3,681,269 + -0.3 3,681,269 + +0.3 3,681,277 - +1.1 3,681,348 + +0.1 3,681,502 + Dsui_3430 0.15 +0.0 3,681,502 + Dsui_3430 0.15 +0.5 3,681,663 - Dsui_3430 0.20 +0.7 3,681,726 + Dsui_3430 0.22 -0.3 3,681,809 + Dsui_3430 0.25 -0.3 3,681,860 - +2.1 3,681,933 + Dsui_3430 0.29 -0.3 3,681,933 + Dsui_3430 0.29 -0.0 3,681,941 - +0.1 3,681,977 - +1.1 3,681,986 - Dsui_3430 0.31 -1.0
Or see this region's nucleotide sequence