Strain Fitness in Dechlorosoma suillum PS around Dsui_2963

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2962 and Dsui_2963 overlap by 8 nucleotidesDsui_2963 and Dsui_2964 are separated by 3 nucleotidesDsui_2964 and Dsui_2965 are separated by 28 nucleotides Dsui_2962: Dsui_2962 - cobalamin biosynthesis protein CbiD, at 3,169,727 to 3,170,923 _2962 Dsui_2963: Dsui_2963 - precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit,precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit, at 3,170,916 to 3,172,208 _2963 Dsui_2964: Dsui_2964 - precorrin-2 C20-methyltransferase, at 3,172,212 to 3,173,012 _2964 Dsui_2965: Dsui_2965 - cobalamin biosynthesis protein CbiG, at 3,173,041 to 3,173,826 _2965 Position (kb) 3170 3171 3172 3173Strain fitness (log2 ratio) -1 0 1 2at 3169.943 kb on - strand, within Dsui_2962at 3170.159 kb on - strandat 3170.250 kb on + strand, within Dsui_2962at 3170.250 kb on + strand, within Dsui_2962at 3170.250 kb on + strand, within Dsui_2962at 3170.258 kb on - strandat 3170.258 kb on - strandat 3170.258 kb on - strandat 3170.365 kb on + strand, within Dsui_2962at 3170.429 kb on + strand, within Dsui_2962at 3170.444 kb on + strand, within Dsui_2962at 3170.533 kb on + strand, within Dsui_2962at 3170.578 kb on + strand, within Dsui_2962at 3170.598 kb on + strand, within Dsui_2962at 3170.626 kb on - strandat 3170.643 kb on + strand, within Dsui_2962at 3170.930 kb on + strandat 3170.938 kb on - strandat 3170.938 kb on - strandat 3171.217 kb on - strandat 3171.324 kb on - strandat 3171.566 kb on - strand, within Dsui_2963at 3171.580 kb on + strand, within Dsui_2963at 3171.737 kb on + strand, within Dsui_2963at 3171.806 kb on + strand, within Dsui_2963at 3171.806 kb on + strand, within Dsui_2963at 3171.814 kb on - strand, within Dsui_2963at 3172.068 kb on + strand, within Dsui_2963at 3172.129 kb on + strandat 3172.210 kb on - strandat 3172.359 kb on - strand, within Dsui_2964at 3172.381 kb on + strand, within Dsui_2964at 3172.498 kb on + strand, within Dsui_2964at 3172.603 kb on - strandat 3172.668 kb on + strand, within Dsui_2964at 3172.808 kb on + strand, within Dsui_2964at 3172.914 kb on - strand, within Dsui_2964at 3173.016 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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3,169,943 - Dsui_2962 0.18 +0.6
3,170,159 - +2.2
3,170,250 + Dsui_2962 0.44 -0.8
3,170,250 + Dsui_2962 0.44 +0.1
3,170,250 + Dsui_2962 0.44 -0.8
3,170,258 - -0.2
3,170,258 - -0.8
3,170,258 - +1.2
3,170,365 + Dsui_2962 0.53 -0.2
3,170,429 + Dsui_2962 0.59 -0.5
3,170,444 + Dsui_2962 0.60 -1.3
3,170,533 + Dsui_2962 0.67 +0.6
3,170,578 + Dsui_2962 0.71 -0.1
3,170,598 + Dsui_2962 0.73 +0.4
3,170,626 - +0.6
3,170,643 + Dsui_2962 0.77 -0.0
3,170,930 + -1.4
3,170,938 - +1.2
3,170,938 - +2.2
3,171,217 - +2.2
3,171,324 - +0.2
3,171,566 - Dsui_2963 0.50 -0.8
3,171,580 + Dsui_2963 0.51 -1.3
3,171,737 + Dsui_2963 0.63 -0.5
3,171,806 + Dsui_2963 0.69 +0.3
3,171,806 + Dsui_2963 0.69 -1.2
3,171,814 - Dsui_2963 0.69 -0.2
3,172,068 + Dsui_2963 0.89 -0.7
3,172,129 + +0.8
3,172,210 - +0.2
3,172,359 - Dsui_2964 0.18 +0.3
3,172,381 + Dsui_2964 0.21 -1.0
3,172,498 + Dsui_2964 0.36 -0.2
3,172,603 - -0.4
3,172,668 + Dsui_2964 0.57 -0.0
3,172,808 + Dsui_2964 0.74 -0.1
3,172,914 - Dsui_2964 0.88 -0.5
3,173,016 + +0.9

Or see this region's nucleotide sequence