Strain Fitness in Dechlorosoma suillum PS around Dsui_2757

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2755 and Dsui_2756 are separated by 89 nucleotidesDsui_2756 and Dsui_2757 are separated by 3 nucleotidesDsui_2757 and Dsui_2758 are separated by 213 nucleotides Dsui_2755: Dsui_2755 - hypothetical protein, at 2,915,689 to 2,915,889 _2755 Dsui_2756: Dsui_2756 - hypothetical protein, at 2,915,979 to 2,916,593 _2756 Dsui_2757: Dsui_2757 - spermidine synthase, at 2,916,597 to 2,917,403 _2757 Dsui_2758: Dsui_2758 - putative SAM-dependent methyltransferase, at 2,917,617 to 2,918,633 _2758 Position (kb) 2916 2917 2918Strain fitness (log2 ratio) -1 0 1 2 3at 2915.639 kb on - strandat 2915.963 kb on - strandat 2915.992 kb on + strandat 2916.035 kb on - strandat 2916.157 kb on + strand, within Dsui_2756at 2916.478 kb on + strand, within Dsui_2756at 2916.505 kb on + strand, within Dsui_2756at 2916.621 kb on - strandat 2916.625 kb on + strandat 2916.627 kb on - strandat 2916.690 kb on + strand, within Dsui_2757at 2916.714 kb on + strand, within Dsui_2757at 2916.714 kb on + strand, within Dsui_2757at 2916.722 kb on - strandat 2916.722 kb on - strandat 2916.854 kb on - strandat 2916.858 kb on + strand, within Dsui_2757at 2916.999 kb on + strand, within Dsui_2757at 2917.061 kb on + strand, within Dsui_2757at 2917.114 kb on + strandat 2917.157 kb on + strand, within Dsui_2757at 2917.157 kb on + strand, within Dsui_2757at 2917.203 kb on - strandat 2917.449 kb on + strandat 2917.603 kb on + strandat 2917.603 kb on + strandat 2917.618 kb on + strandat 2917.705 kb on - strandat 2917.832 kb on + strand, within Dsui_2758at 2918.123 kb on + strand, within Dsui_2758at 2918.238 kb on - strand, within Dsui_2758at 2918.276 kb on + strand, within Dsui_2758at 2918.276 kb on + strand, within Dsui_2758at 2918.325 kb on - strand, within Dsui_2758

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,915,639 - +0.1
2,915,963 - +0.3
2,915,992 + -1.4
2,916,035 - -1.1
2,916,157 + Dsui_2756 0.29 +0.1
2,916,478 + Dsui_2756 0.81 +0.8
2,916,505 + Dsui_2756 0.86 +0.9
2,916,621 - +1.8
2,916,625 + +0.8
2,916,627 - +0.7
2,916,690 + Dsui_2757 0.12 -0.2
2,916,714 + Dsui_2757 0.14 -0.3
2,916,714 + Dsui_2757 0.14 -1.2
2,916,722 - +2.3
2,916,722 - +1.3
2,916,854 - +2.3
2,916,858 + Dsui_2757 0.32 -0.7
2,916,999 + Dsui_2757 0.50 -0.6
2,917,061 + Dsui_2757 0.57 -0.6
2,917,114 + +1.7
2,917,157 + Dsui_2757 0.69 +1.5
2,917,157 + Dsui_2757 0.69 -0.2
2,917,203 - +1.3
2,917,449 + +3.3
2,917,603 + -0.0
2,917,603 + +1.0
2,917,618 + -0.2
2,917,705 - +2.3
2,917,832 + Dsui_2758 0.21 -0.5
2,918,123 + Dsui_2758 0.50 +0.5
2,918,238 - Dsui_2758 0.61 -0.1
2,918,276 + Dsui_2758 0.65 -1.5
2,918,276 + Dsui_2758 0.65 +0.0
2,918,325 - Dsui_2758 0.70 -0.1

Or see this region's nucleotide sequence