Strain Fitness in Dechlorosoma suillum PS around Dsui_2617

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2615 and Dsui_2616 overlap by 10 nucleotidesDsui_2616 and Dsui_2617 are separated by 477 nucleotidesDsui_2617 and Dsui_2618 are separated by 18 nucleotidesDsui_2618 and Dsui_2619 are separated by 40 nucleotidesDsui_2619 and Dsui_2620 are separated by 4 nucleotides Dsui_2615: Dsui_2615 - hypothetical protein, at 2,768,053 to 2,769,579 _2615 Dsui_2616: Dsui_2616 - hypothetical protein, at 2,769,570 to 2,769,788 _2616 Dsui_2617: Dsui_2617 - DNA recombination-dependent growth factor C, at 2,770,266 to 2,771,168 _2617 Dsui_2618: Dsui_2618 - putative transcriptional regulator, at 2,771,187 to 2,771,405 _2618 Dsui_2619: Dsui_2619 - hypothetical protein, at 2,771,446 to 2,771,676 _2619 Dsui_2620: Dsui_2620 - hypothetical protein, at 2,771,681 to 2,773,621 _2620 Position (kb) 2770 2771 2772Strain fitness (log2 ratio) -1 0 1at 2769.418 kb on + strandat 2769.428 kb on + strandat 2769.428 kb on + strandat 2769.428 kb on + strandat 2769.428 kb on + strandat 2769.428 kb on + strandat 2769.436 kb on - strandat 2769.436 kb on - strandat 2769.443 kb on + strandat 2769.473 kb on - strandat 2769.533 kb on + strandat 2769.533 kb on + strandat 2769.533 kb on + strandat 2769.541 kb on - strandat 2769.541 kb on - strandat 2769.552 kb on + strandat 2769.552 kb on + strandat 2769.652 kb on + strand, within Dsui_2616at 2769.667 kb on + strand, within Dsui_2616at 2769.701 kb on + strand, within Dsui_2616at 2769.763 kb on - strand, within Dsui_2616at 2769.796 kb on - strandat 2769.933 kb on + strandat 2769.983 kb on - strandat 2770.000 kb on - strandat 2770.116 kb on - strandat 2770.142 kb on + strandat 2770.161 kb on + strandat 2770.206 kb on + strandat 2770.260 kb on - strandat 2770.272 kb on - strandat 2770.340 kb on - strandat 2770.520 kb on + strand, within Dsui_2617at 2771.592 kb on + strand, within Dsui_2619at 2771.730 kb on + strandat 2771.730 kb on + strandat 2771.735 kb on + strandat 2771.790 kb on - strandat 2771.803 kb on + strandat 2771.906 kb on - strand, within Dsui_2620at 2772.105 kb on - strand, within Dsui_2620

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,769,418 + +1.3
2,769,428 + -0.3
2,769,428 + +0.4
2,769,428 + -1.0
2,769,428 + -0.7
2,769,428 + +0.3
2,769,436 - +0.6
2,769,436 - -0.5
2,769,443 + -0.7
2,769,473 - +0.2
2,769,533 + +0.9
2,769,533 + +0.0
2,769,533 + +0.3
2,769,541 - +0.7
2,769,541 - +1.0
2,769,552 + +0.7
2,769,552 + -0.6
2,769,652 + Dsui_2616 0.37 -1.1
2,769,667 + Dsui_2616 0.44 +1.3
2,769,701 + Dsui_2616 0.60 -1.5
2,769,763 - Dsui_2616 0.88 +0.2
2,769,796 - -1.1
2,769,933 + -0.1
2,769,983 - -0.9
2,770,000 - -0.3
2,770,116 - +0.3
2,770,142 + -0.8
2,770,161 + -0.5
2,770,206 + +0.3
2,770,260 - +0.3
2,770,272 - -0.9
2,770,340 - +1.1
2,770,520 + Dsui_2617 0.28 -1.4
2,771,592 + Dsui_2619 0.63 +1.6
2,771,730 + -0.3
2,771,730 + -0.7
2,771,735 + +1.3
2,771,790 - -0.8
2,771,803 + +0.5
2,771,906 - Dsui_2620 0.12 +0.3
2,772,105 - Dsui_2620 0.22 -0.1

Or see this region's nucleotide sequence