Strain Fitness in Dechlorosoma suillum PS around Dsui_2583

Experiment: defined media with 30 mM sodium lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2582 and Dsui_2583 are separated by 390 nucleotidesDsui_2583 and Dsui_2584 are separated by 13 nucleotides Dsui_2582: Dsui_2582 - hypothetical protein, at 2,735,541 to 2,736,326 _2582 Dsui_2583: Dsui_2583 - hypothetical protein, at 2,736,717 to 2,736,812 _2583 Dsui_2584: Dsui_2584 - hypothetical protein, at 2,736,826 to 2,736,966 _2584 Position (kb) 2736 2737Strain fitness (log2 ratio) -2 -1 0 1at 2735.730 kb on - strand, within Dsui_2582at 2735.863 kb on + strand, within Dsui_2582at 2735.871 kb on - strand, within Dsui_2582at 2735.908 kb on + strand, within Dsui_2582at 2735.916 kb on - strand, within Dsui_2582at 2736.042 kb on + strand, within Dsui_2582at 2736.108 kb on + strand, within Dsui_2582at 2736.135 kb on - strand, within Dsui_2582at 2736.206 kb on + strand, within Dsui_2582at 2736.235 kb on - strand, within Dsui_2582at 2736.259 kb on - strandat 2736.264 kb on + strandat 2736.285 kb on + strandat 2736.294 kb on - strandat 2736.294 kb on - strandat 2736.297 kb on + strandat 2736.356 kb on + strandat 2736.356 kb on + strandat 2736.358 kb on + strandat 2736.361 kb on + strandat 2736.364 kb on - strandat 2736.364 kb on - strandat 2736.364 kb on - strandat 2736.364 kb on - strandat 2736.369 kb on - strandat 2736.369 kb on - strandat 2736.376 kb on - strandat 2736.379 kb on + strandat 2736.387 kb on - strandat 2736.392 kb on - strandat 2736.433 kb on + strandat 2736.474 kb on + strandat 2736.594 kb on - strandat 2736.650 kb on - strandat 2736.666 kb on + strandat 2736.686 kb on + strandat 2736.736 kb on + strand, within Dsui_2583at 2736.736 kb on + strand, within Dsui_2583at 2736.773 kb on - strand, within Dsui_2583at 2736.775 kb on + strand, within Dsui_2583at 2736.783 kb on + strand, within Dsui_2583at 2736.791 kb on - strand, within Dsui_2583at 2736.884 kb on + strand, within Dsui_2584at 2737.113 kb on - strandat 2737.167 kb on - strandat 2737.167 kb on - strandat 2737.244 kb on - strandat 2737.249 kb on - strandat 2737.249 kb on - strandat 2737.265 kb on + strandat 2737.273 kb on - strandat 2737.341 kb on + strandat 2737.349 kb on + strandat 2737.373 kb on + strandat 2737.463 kb on - strandat 2737.553 kb on - strandat 2737.660 kb on - strandat 2737.668 kb on - strandat 2737.708 kb on - strandat 2737.756 kb on - strandat 2737.756 kb on - strandat 2737.789 kb on - strandat 2737.792 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
remove
2,735,730 - Dsui_2582 0.24 -1.3
2,735,863 + Dsui_2582 0.41 -0.1
2,735,871 - Dsui_2582 0.42 +0.7
2,735,908 + Dsui_2582 0.47 -0.4
2,735,916 - Dsui_2582 0.48 -0.6
2,736,042 + Dsui_2582 0.64 -0.7
2,736,108 + Dsui_2582 0.72 +0.3
2,736,135 - Dsui_2582 0.76 -0.6
2,736,206 + Dsui_2582 0.85 -0.6
2,736,235 - Dsui_2582 0.88 -0.7
2,736,259 - -1.3
2,736,264 + +0.5
2,736,285 + -0.6
2,736,294 - -0.2
2,736,294 - -0.2
2,736,297 + -0.1
2,736,356 + -0.5
2,736,356 + +0.1
2,736,358 + -0.7
2,736,361 + -0.8
2,736,364 - +0.9
2,736,364 - +0.6
2,736,364 - -0.5
2,736,364 - +0.9
2,736,369 - -1.8
2,736,369 - -1.3
2,736,376 - -0.5
2,736,379 + -0.8
2,736,387 - +0.3
2,736,392 - -0.1
2,736,433 + -0.2
2,736,474 + -1.1
2,736,594 - -0.2
2,736,650 - +0.0
2,736,666 + -0.6
2,736,686 + -0.1
2,736,736 + Dsui_2583 0.20 -1.5
2,736,736 + Dsui_2583 0.20 -0.9
2,736,773 - Dsui_2583 0.58 -0.7
2,736,775 + Dsui_2583 0.60 -0.8
2,736,783 + Dsui_2583 0.69 -0.2
2,736,791 - Dsui_2583 0.77 -0.2
2,736,884 + Dsui_2584 0.41 -1.0
2,737,113 - -1.2
2,737,167 - -0.5
2,737,167 - -0.2
2,737,244 - -0.1
2,737,249 - -0.6
2,737,249 - -0.3
2,737,265 + -1.1
2,737,273 - -0.2
2,737,341 + -0.6
2,737,349 + -0.2
2,737,373 + -0.1
2,737,463 - -0.1
2,737,553 - -1.4
2,737,660 - -0.3
2,737,668 - -0.4
2,737,708 - -0.5
2,737,756 - -0.4
2,737,756 - -0.3
2,737,789 - -0.0
2,737,792 + -1.4

Or see this region's nucleotide sequence