Experiment: defined media with 30 mM sodium lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2436 and Dsui_2437 are separated by 444 nucleotides Dsui_2437 and Dsui_2438 overlap by 17 nucleotides Dsui_2438 and Dsui_2439 overlap by 22 nucleotides Dsui_2439 and Dsui_2440 are separated by 6 nucleotides
Dsui_2436: Dsui_2436 - ribonuclease, Rne/Rng family, at 2,595,977 to 2,598,739
_2436
Dsui_2437: Dsui_2437 - pseudouridine synthase, RluA family, at 2,599,184 to 2,600,179
_2437
Dsui_2438: Dsui_2438 - haloacid dehalogenase superfamily enzyme, subfamily IA, at 2,600,163 to 2,600,819
_2438
Dsui_2439: Dsui_2439 - ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase, at 2,600,798 to 2,601,148
_2439
Dsui_2440: Dsui_2440 - ClpP class periplasmic serine protease, at 2,601,155 to 2,602,141
_2440
Position (kb)
2599
2600
2601 Strain fitness (log2 ratio)
-1
0
1
2 at 2598.781 kb on - strand at 2598.987 kb on + strand at 2598.995 kb on - strand at 2598.995 kb on - strand at 2598.995 kb on - strand at 2598.995 kb on - strand at 2598.995 kb on - strand at 2598.997 kb on + strand at 2599.029 kb on - strand at 2599.046 kb on - strand at 2599.056 kb on - strand at 2599.062 kb on - strand at 2599.138 kb on + strand at 2599.144 kb on + strand at 2599.144 kb on + strand at 2599.152 kb on - strand at 2599.221 kb on + strand at 2599.273 kb on + strand at 2599.317 kb on + strand, within Dsui_2437 at 2599.317 kb on + strand, within Dsui_2437 at 2599.319 kb on + strand, within Dsui_2437 at 2599.629 kb on + strand, within Dsui_2437 at 2599.637 kb on - strand, within Dsui_2437 at 2599.672 kb on - strand at 2599.752 kb on + strand, within Dsui_2437 at 2599.959 kb on + strand, within Dsui_2437 at 2600.021 kb on + strand, within Dsui_2437 at 2600.031 kb on - strand at 2600.046 kb on + strand, within Dsui_2437 at 2600.069 kb on + strand, within Dsui_2437 at 2600.099 kb on - strand at 2600.108 kb on + strand at 2600.114 kb on + strand at 2600.114 kb on + strand at 2600.210 kb on + strand at 2600.308 kb on + strand, within Dsui_2438 at 2600.523 kb on + strand, within Dsui_2438 at 2600.523 kb on + strand, within Dsui_2438 at 2600.649 kb on + strand, within Dsui_2438 at 2600.692 kb on + strand, within Dsui_2438 at 2600.847 kb on - strand at 2600.919 kb on + strand, within Dsui_2439 at 2600.924 kb on + strand, within Dsui_2439 at 2600.997 kb on + strand, within Dsui_2439 at 2601.006 kb on - strand, within Dsui_2439 at 2601.010 kb on - strand at 2601.161 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate remove 2,598,781 - +0.7 2,598,987 + -0.1 2,598,995 - -0.4 2,598,995 - +0.1 2,598,995 - -1.3 2,598,995 - +0.3 2,598,995 - +0.8 2,598,997 + +0.3 2,599,029 - +0.0 2,599,046 - +0.0 2,599,056 - -0.3 2,599,062 - +0.4 2,599,138 + -0.3 2,599,144 + +0.3 2,599,144 + -0.3 2,599,152 - -0.1 2,599,221 + +0.5 2,599,273 + +0.2 2,599,317 + Dsui_2437 0.13 -0.1 2,599,317 + Dsui_2437 0.13 +0.4 2,599,319 + Dsui_2437 0.14 +0.3 2,599,629 + Dsui_2437 0.45 -0.7 2,599,637 - Dsui_2437 0.45 +0.9 2,599,672 - -0.3 2,599,752 + Dsui_2437 0.57 -0.1 2,599,959 + Dsui_2437 0.78 -0.7 2,600,021 + Dsui_2437 0.84 -0.1 2,600,031 - +1.3 2,600,046 + Dsui_2437 0.87 -0.5 2,600,069 + Dsui_2437 0.89 -0.3 2,600,099 - +0.0 2,600,108 + +0.5 2,600,114 + -0.1 2,600,114 + +0.1 2,600,210 + +0.0 2,600,308 + Dsui_2438 0.22 +0.2 2,600,523 + Dsui_2438 0.55 -0.1 2,600,523 + Dsui_2438 0.55 +0.1 2,600,649 + Dsui_2438 0.74 +0.1 2,600,692 + Dsui_2438 0.81 +0.1 2,600,847 - +2.3 2,600,919 + Dsui_2439 0.34 +0.0 2,600,924 + Dsui_2439 0.36 +0.0 2,600,997 + Dsui_2439 0.57 +0.5 2,601,006 - Dsui_2439 0.59 -0.4 2,601,010 - +1.3 2,601,161 + -0.3
Or see this region's nucleotide sequence