Strain Fitness in Dechlorosoma suillum PS around Dsui_2436

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2434 and Dsui_2435 overlap by 4 nucleotidesDsui_2435 and Dsui_2436 are separated by 88 nucleotidesDsui_2436 and Dsui_2437 are separated by 444 nucleotides Dsui_2434: Dsui_2434 - excinuclease ABC, B subunit, at 2,593,292 to 2,595,364 _2434 Dsui_2435: Dsui_2435 - protein-tyrosine-phosphatase, at 2,595,361 to 2,595,888 _2435 Dsui_2436: Dsui_2436 - ribonuclease, Rne/Rng family, at 2,595,977 to 2,598,739 _2436 Dsui_2437: Dsui_2437 - pseudouridine synthase, RluA family, at 2,599,184 to 2,600,179 _2437 Position (kb) 2595 2596 2597 2598 2599Strain fitness (log2 ratio) -2 -1 0 1 2at 2595.157 kb on + strandat 2595.161 kb on + strandat 2595.225 kb on - strandat 2595.260 kb on + strandat 2595.266 kb on + strandat 2595.312 kb on + strandat 2595.351 kb on + strandat 2595.361 kb on - strandat 2595.363 kb on + strandat 2595.388 kb on + strandat 2595.396 kb on - strandat 2595.518 kb on + strand, within Dsui_2435at 2595.556 kb on - strand, within Dsui_2435at 2595.556 kb on - strand, within Dsui_2435at 2595.620 kb on + strand, within Dsui_2435at 2595.680 kb on + strand, within Dsui_2435at 2595.680 kb on + strand, within Dsui_2435at 2595.748 kb on - strand, within Dsui_2435at 2595.769 kb on + strand, within Dsui_2435at 2595.779 kb on + strand, within Dsui_2435at 2595.859 kb on + strandat 2595.865 kb on + strandat 2595.882 kb on + strandat 2595.936 kb on + strandat 2595.944 kb on + strandat 2595.968 kb on + strandat 2596.027 kb on - strandat 2596.074 kb on + strandat 2596.098 kb on - strandat 2596.162 kb on - strandat 2596.206 kb on - strandat 2596.234 kb on - strandat 2596.253 kb on - strandat 2596.271 kb on - strand, within Dsui_2436at 2596.453 kb on + strand, within Dsui_2436at 2596.484 kb on - strand, within Dsui_2436at 2596.588 kb on - strand, within Dsui_2436at 2596.637 kb on + strand, within Dsui_2436at 2596.662 kb on + strandat 2596.718 kb on - strand, within Dsui_2436at 2596.754 kb on - strand, within Dsui_2436at 2596.754 kb on - strand, within Dsui_2436at 2596.769 kb on - strand, within Dsui_2436at 2596.992 kb on - strand, within Dsui_2436at 2597.201 kb on - strand, within Dsui_2436at 2598.781 kb on - strandat 2598.987 kb on + strandat 2598.995 kb on - strandat 2598.995 kb on - strandat 2598.995 kb on - strandat 2598.995 kb on - strandat 2598.995 kb on - strandat 2598.997 kb on + strandat 2599.029 kb on - strandat 2599.046 kb on - strandat 2599.056 kb on - strandat 2599.062 kb on - strandat 2599.138 kb on + strandat 2599.144 kb on + strandat 2599.144 kb on + strandat 2599.152 kb on - strandat 2599.221 kb on + strandat 2599.273 kb on + strandat 2599.317 kb on + strand, within Dsui_2437at 2599.317 kb on + strand, within Dsui_2437at 2599.319 kb on + strand, within Dsui_2437at 2599.629 kb on + strand, within Dsui_2437at 2599.637 kb on - strand, within Dsui_2437at 2599.672 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,595,157 + -0.1
2,595,161 + -0.3
2,595,225 - +0.9
2,595,260 + +0.2
2,595,266 + +0.5
2,595,312 + +0.4
2,595,351 + +1.3
2,595,361 - +1.3
2,595,363 + -0.2
2,595,388 + -0.2
2,595,396 - +0.5
2,595,518 + Dsui_2435 0.30 -0.7
2,595,556 - Dsui_2435 0.37 +0.5
2,595,556 - Dsui_2435 0.37 +0.3
2,595,620 + Dsui_2435 0.49 -0.2
2,595,680 + Dsui_2435 0.60 +0.5
2,595,680 + Dsui_2435 0.60 +0.9
2,595,748 - Dsui_2435 0.73 +1.3
2,595,769 + Dsui_2435 0.77 +0.5
2,595,779 + Dsui_2435 0.79 -0.7
2,595,859 + +0.9
2,595,865 + +1.7
2,595,882 + +0.7
2,595,936 + +2.0
2,595,944 + +0.6
2,595,968 + -0.1
2,596,027 - -0.7
2,596,074 + +0.2
2,596,098 - -0.2
2,596,162 - -0.0
2,596,206 - -0.2
2,596,234 - -0.1
2,596,253 - +0.5
2,596,271 - Dsui_2436 0.11 -0.3
2,596,453 + Dsui_2436 0.17 +0.2
2,596,484 - Dsui_2436 0.18 -0.3
2,596,588 - Dsui_2436 0.22 -1.9
2,596,637 + Dsui_2436 0.24 -0.7
2,596,662 + +1.3
2,596,718 - Dsui_2436 0.27 -0.4
2,596,754 - Dsui_2436 0.28 +0.7
2,596,754 - Dsui_2436 0.28 -0.7
2,596,769 - Dsui_2436 0.29 +0.5
2,596,992 - Dsui_2436 0.37 +0.5
2,597,201 - Dsui_2436 0.44 +0.5
2,598,781 - +0.7
2,598,987 + -0.1
2,598,995 - -0.4
2,598,995 - +0.1
2,598,995 - -1.3
2,598,995 - +0.3
2,598,995 - +0.8
2,598,997 + +0.3
2,599,029 - +0.0
2,599,046 - +0.0
2,599,056 - -0.3
2,599,062 - +0.4
2,599,138 + -0.3
2,599,144 + +0.3
2,599,144 + -0.3
2,599,152 - -0.1
2,599,221 + +0.5
2,599,273 + +0.2
2,599,317 + Dsui_2437 0.13 -0.1
2,599,317 + Dsui_2437 0.13 +0.4
2,599,319 + Dsui_2437 0.14 +0.3
2,599,629 + Dsui_2437 0.45 -0.7
2,599,637 - Dsui_2437 0.45 +0.9
2,599,672 - -0.3

Or see this region's nucleotide sequence