Strain Fitness in Dechlorosoma suillum PS around Dsui_2364

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2362 and Dsui_2363 are separated by 27 nucleotidesDsui_2363 and Dsui_2364 are separated by 185 nucleotidesDsui_2364 and Dsui_2365 are separated by 0 nucleotides Dsui_2362: Dsui_2362 - surface antigen family protein, at 2,512,747 to 2,513,331 _2362 Dsui_2363: Dsui_2363 - hypothetical protein, at 2,513,359 to 2,513,580 _2363 Dsui_2364: Dsui_2364 - ABC-type sugar transport system, periplasmic component, at 2,513,766 to 2,514,707 _2364 Dsui_2365: Dsui_2365 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,514,708 to 2,517,632 _2365 Position (kb) 2513 2514 2515Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2513.092 kb on + strandat 2513.145 kb on - strandat 2513.313 kb on + strandat 2513.335 kb on + strandat 2513.366 kb on + strandat 2513.490 kb on - strandat 2513.550 kb on + strand, within Dsui_2363at 2513.555 kb on + strand, within Dsui_2363at 2513.565 kb on + strandat 2513.798 kb on + strandat 2513.819 kb on + strandat 2513.821 kb on - strandat 2513.875 kb on + strand, within Dsui_2364at 2513.877 kb on + strand, within Dsui_2364at 2513.910 kb on + strandat 2514.031 kb on + strandat 2514.094 kb on - strandat 2514.101 kb on - strandat 2514.156 kb on + strand, within Dsui_2364at 2514.162 kb on - strandat 2514.190 kb on - strandat 2514.271 kb on + strand, within Dsui_2364at 2514.337 kb on + strand, within Dsui_2364at 2514.337 kb on + strand, within Dsui_2364at 2514.457 kb on + strand, within Dsui_2364at 2514.457 kb on + strand, within Dsui_2364at 2514.491 kb on - strandat 2514.520 kb on + strand, within Dsui_2364at 2514.564 kb on + strand, within Dsui_2364at 2514.571 kb on + strand, within Dsui_2364at 2514.791 kb on + strandat 2514.894 kb on + strandat 2514.955 kb on + strandat 2514.963 kb on - strandat 2515.015 kb on - strandat 2515.075 kb on + strandat 2515.081 kb on - strandat 2515.083 kb on + strand, within Dsui_2365at 2515.110 kb on + strand, within Dsui_2365at 2515.198 kb on - strand, within Dsui_2365at 2515.281 kb on + strand, within Dsui_2365at 2515.361 kb on + strand, within Dsui_2365at 2515.414 kb on - strandat 2515.468 kb on + strand, within Dsui_2365at 2515.494 kb on - strandat 2515.593 kb on - strandat 2515.625 kb on + strandat 2515.630 kb on + strand, within Dsui_2365

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,513,092 + +0.2
2,513,145 - +1.2
2,513,313 + -0.4
2,513,335 + +2.2
2,513,366 + +0.6
2,513,490 - +1.2
2,513,550 + Dsui_2363 0.86 -1.3
2,513,555 + Dsui_2363 0.88 +0.8
2,513,565 + +0.2
2,513,798 + -0.6
2,513,819 + +1.2
2,513,821 - +0.6
2,513,875 + Dsui_2364 0.12 -0.2
2,513,877 + Dsui_2364 0.12 -1.4
2,513,910 + -0.1
2,514,031 + +1.2
2,514,094 - +1.2
2,514,101 - +0.9
2,514,156 + Dsui_2364 0.41 +0.5
2,514,162 - +3.2
2,514,190 - +2.2
2,514,271 + Dsui_2364 0.54 -1.0
2,514,337 + Dsui_2364 0.61 -0.1
2,514,337 + Dsui_2364 0.61 +0.2
2,514,457 + Dsui_2364 0.73 +0.1
2,514,457 + Dsui_2364 0.73 +0.2
2,514,491 - +0.6
2,514,520 + Dsui_2364 0.80 -0.5
2,514,564 + Dsui_2364 0.85 +0.3
2,514,571 + Dsui_2364 0.85 +1.7
2,514,791 + +1.0
2,514,894 + -2.1
2,514,955 + +0.3
2,514,963 - +1.2
2,515,015 - +0.2
2,515,075 + +1.6
2,515,081 - +1.2
2,515,083 + Dsui_2365 0.13 +0.8
2,515,110 + Dsui_2365 0.14 +0.2
2,515,198 - Dsui_2365 0.17 -0.5
2,515,281 + Dsui_2365 0.20 +0.6
2,515,361 + Dsui_2365 0.22 -1.6
2,515,414 - -0.4
2,515,468 + Dsui_2365 0.26 -1.3
2,515,494 - +1.0
2,515,593 - +0.2
2,515,625 + +2.2
2,515,630 + Dsui_2365 0.32 -0.5

Or see this region's nucleotide sequence