Experiment: defined media with 30 mM sodium lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1968 and Dsui_1969 overlap by 1 nucleotides Dsui_1969 and Dsui_1970 overlap by 4 nucleotides Dsui_1970 and Dsui_1971 are separated by 10 nucleotides
Dsui_1968: Dsui_1968 - 5''/3''-nucleotidase SurE, at 2,076,462 to 2,077,202
_1968
Dsui_1969: Dsui_1969 - protein-L-isoaspartate and D-aspartate O-methyltransferase, at 2,077,202 to 2,077,876
_1969
Dsui_1970: Dsui_1970 - metalloendopeptidase-like membrane protein, at 2,077,873 to 2,078,781
_1970
Dsui_1971: Dsui_1971 - RNA polymerase sigma factor RpoS, at 2,078,792 to 2,079,778
_1971
Position (kb)
2077
2078
2079 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2076.942 kb on - strand, within Dsui_1968 at 2076.966 kb on - strand, within Dsui_1968 at 2076.966 kb on - strand, within Dsui_1968 at 2076.986 kb on - strand, within Dsui_1968 at 2077.001 kb on + strand, within Dsui_1968 at 2077.001 kb on + strand, within Dsui_1968 at 2077.009 kb on - strand, within Dsui_1968 at 2077.063 kb on + strand, within Dsui_1968 at 2077.066 kb on - strand, within Dsui_1968 at 2077.071 kb on - strand, within Dsui_1968 at 2077.116 kb on + strand, within Dsui_1968 at 2077.121 kb on + strand, within Dsui_1968 at 2077.124 kb on - strand, within Dsui_1968 at 2077.129 kb on - strand at 2077.129 kb on - strand at 2077.132 kb on + strand at 2077.174 kb on + strand at 2077.177 kb on - strand at 2077.265 kb on - strand at 2077.345 kb on + strand, within Dsui_1969 at 2077.346 kb on + strand, within Dsui_1969 at 2077.361 kb on + strand, within Dsui_1969 at 2077.372 kb on - strand, within Dsui_1969 at 2077.419 kb on - strand, within Dsui_1969 at 2077.441 kb on + strand, within Dsui_1969 at 2077.441 kb on + strand, within Dsui_1969 at 2077.452 kb on + strand, within Dsui_1969 at 2077.452 kb on + strand, within Dsui_1969 at 2077.460 kb on - strand, within Dsui_1969 at 2077.460 kb on - strand, within Dsui_1969 at 2077.539 kb on - strand, within Dsui_1969 at 2077.549 kb on + strand, within Dsui_1969 at 2077.557 kb on - strand, within Dsui_1969 at 2077.752 kb on + strand, within Dsui_1969 at 2077.808 kb on + strand, within Dsui_1969 at 2077.869 kb on - strand at 2077.907 kb on + strand at 2077.972 kb on + strand, within Dsui_1970 at 2077.989 kb on + strand, within Dsui_1970 at 2078.056 kb on + strand, within Dsui_1970 at 2078.078 kb on + strand, within Dsui_1970 at 2078.305 kb on - strand, within Dsui_1970 at 2078.307 kb on + strand, within Dsui_1970 at 2078.307 kb on + strand, within Dsui_1970 at 2078.307 kb on + strand, within Dsui_1970 at 2078.315 kb on - strand, within Dsui_1970 at 2078.482 kb on + strand, within Dsui_1970 at 2078.539 kb on + strand, within Dsui_1970 at 2078.573 kb on - strand at 2078.585 kb on - strand, within Dsui_1970 at 2078.645 kb on + strand, within Dsui_1970 at 2078.663 kb on + strand, within Dsui_1970 at 2078.775 kb on + strand at 2078.784 kb on + strand at 2078.784 kb on + strand at 2078.784 kb on + strand at 2078.784 kb on + strand at 2078.869 kb on - strand at 2078.869 kb on - strand at 2078.872 kb on + strand at 2079.030 kb on - strand, within Dsui_1971 at 2079.035 kb on - strand, within Dsui_1971 at 2079.069 kb on + strand, within Dsui_1971 at 2079.077 kb on - strand, within Dsui_1971 at 2079.085 kb on + strand, within Dsui_1971 at 2079.097 kb on + strand, within Dsui_1971 at 2079.147 kb on + strand, within Dsui_1971 at 2079.148 kb on + strand, within Dsui_1971 at 2079.155 kb on - strand at 2079.185 kb on + strand, within Dsui_1971 at 2079.209 kb on - strand, within Dsui_1971 at 2079.227 kb on + strand, within Dsui_1971 at 2079.345 kb on + strand, within Dsui_1971 at 2079.353 kb on - strand, within Dsui_1971 at 2079.377 kb on + strand, within Dsui_1971 at 2079.415 kb on - strand, within Dsui_1971 at 2079.458 kb on - strand, within Dsui_1971 at 2079.480 kb on + strand, within Dsui_1971 at 2079.488 kb on + strand, within Dsui_1971 at 2079.496 kb on - strand, within Dsui_1971 at 2079.574 kb on - strand, within Dsui_1971 at 2079.584 kb on - strand, within Dsui_1971 at 2079.635 kb on - strand, within Dsui_1971 at 2079.703 kb on + strand at 2079.709 kb on + strand at 2079.725 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate remove 2,076,942 - Dsui_1968 0.65 -2.3 2,076,966 - Dsui_1968 0.68 -2.7 2,076,966 - Dsui_1968 0.68 -1.4 2,076,986 - Dsui_1968 0.71 -2.3 2,077,001 + Dsui_1968 0.73 +0.5 2,077,001 + Dsui_1968 0.73 -0.6 2,077,009 - Dsui_1968 0.74 -1.0 2,077,063 + Dsui_1968 0.81 -0.2 2,077,066 - Dsui_1968 0.82 -0.3 2,077,071 - Dsui_1968 0.82 -1.5 2,077,116 + Dsui_1968 0.88 -0.1 2,077,121 + Dsui_1968 0.89 +1.2 2,077,124 - Dsui_1968 0.89 -0.7 2,077,129 - -1.1 2,077,129 - -1.3 2,077,132 + -0.9 2,077,174 + -1.3 2,077,177 - -0.1 2,077,265 - -0.4 2,077,345 + Dsui_1969 0.21 -1.3 2,077,346 + Dsui_1969 0.21 -0.2 2,077,361 + Dsui_1969 0.24 -0.7 2,077,372 - Dsui_1969 0.25 -0.0 2,077,419 - Dsui_1969 0.32 -1.3 2,077,441 + Dsui_1969 0.35 -0.0 2,077,441 + Dsui_1969 0.35 -1.0 2,077,452 + Dsui_1969 0.37 -0.2 2,077,452 + Dsui_1969 0.37 -0.8 2,077,460 - Dsui_1969 0.38 -1.0 2,077,460 - Dsui_1969 0.38 -1.5 2,077,539 - Dsui_1969 0.50 +0.0 2,077,549 + Dsui_1969 0.51 -0.5 2,077,557 - Dsui_1969 0.53 -0.1 2,077,752 + Dsui_1969 0.81 -0.2 2,077,808 + Dsui_1969 0.90 +0.6 2,077,869 - -1.1 2,077,907 + -1.9 2,077,972 + Dsui_1970 0.11 -1.1 2,077,989 + Dsui_1970 0.13 -1.6 2,078,056 + Dsui_1970 0.20 -1.3 2,078,078 + Dsui_1970 0.23 -1.7 2,078,305 - Dsui_1970 0.48 +1.2 2,078,307 + Dsui_1970 0.48 -1.7 2,078,307 + Dsui_1970 0.48 -0.3 2,078,307 + Dsui_1970 0.48 -2.0 2,078,315 - Dsui_1970 0.49 +0.2 2,078,482 + Dsui_1970 0.67 -0.6 2,078,539 + Dsui_1970 0.73 -2.1 2,078,573 - +1.2 2,078,585 - Dsui_1970 0.78 -2.0 2,078,645 + Dsui_1970 0.85 -0.3 2,078,663 + Dsui_1970 0.87 +0.5 2,078,775 + +0.0 2,078,784 + -0.4 2,078,784 + -0.1 2,078,784 + -0.2 2,078,784 + -0.0 2,078,869 - -0.0 2,078,869 - -0.1 2,078,872 + +0.1 2,079,030 - Dsui_1971 0.24 -0.6 2,079,035 - Dsui_1971 0.25 -0.9 2,079,069 + Dsui_1971 0.28 +1.1 2,079,077 - Dsui_1971 0.29 +0.0 2,079,085 + Dsui_1971 0.30 -1.1 2,079,097 + Dsui_1971 0.31 -0.1 2,079,147 + Dsui_1971 0.36 +0.4 2,079,148 + Dsui_1971 0.36 -1.4 2,079,155 - +1.6 2,079,185 + Dsui_1971 0.40 +2.0 2,079,209 - Dsui_1971 0.42 -1.6 2,079,227 + Dsui_1971 0.44 -0.3 2,079,345 + Dsui_1971 0.56 -0.2 2,079,353 - Dsui_1971 0.57 -0.5 2,079,377 + Dsui_1971 0.59 +0.2 2,079,415 - Dsui_1971 0.63 -0.4 2,079,458 - Dsui_1971 0.67 +0.4 2,079,480 + Dsui_1971 0.70 -0.4 2,079,488 + Dsui_1971 0.71 -0.1 2,079,496 - Dsui_1971 0.71 +0.3 2,079,574 - Dsui_1971 0.79 -0.5 2,079,584 - Dsui_1971 0.80 +0.5 2,079,635 - Dsui_1971 0.85 -0.3 2,079,703 + +0.6 2,079,709 + +0.3 2,079,725 - -0.4
Or see this region's nucleotide sequence