Experiment: defined media with 30 mM sodium lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1875 and Dsui_1876 are separated by 146 nucleotides Dsui_1876 and Dsui_1877 are separated by 97 nucleotides Dsui_1877 and Dsui_1878 are separated by 69 nucleotides Dsui_1878 and Dsui_1879 overlap by 4 nucleotides
Dsui_1875: Dsui_1875 - hypothetical protein, at 1,973,445 to 1,973,618
_1875
Dsui_1876: Dsui_1876 - transcriptional regulator, at 1,973,765 to 1,974,349
_1876
Dsui_1877: Dsui_1877 - NADH:flavin oxidoreductase, at 1,974,447 to 1,975,529
_1877
Dsui_1878: Dsui_1878 - DMT(drug/metabolite transporter) superfamily permease, at 1,975,599 to 1,976,528
_1878
Dsui_1879: Dsui_1879 - luciferase family oxidoreductase, group 1, at 1,976,525 to 1,977,526
_1879
Position (kb)
1974
1975
1976 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1973.526 kb on - strand, within Dsui_1875 at 1973.545 kb on - strand, within Dsui_1875 at 1973.581 kb on - strand, within Dsui_1875 at 1973.601 kb on + strand at 1973.601 kb on + strand at 1973.645 kb on - strand at 1973.828 kb on + strand, within Dsui_1876 at 1973.892 kb on + strand, within Dsui_1876 at 1974.068 kb on + strand, within Dsui_1876 at 1974.142 kb on + strand, within Dsui_1876 at 1974.147 kb on + strand, within Dsui_1876 at 1974.224 kb on + strand, within Dsui_1876 at 1974.313 kb on + strand at 1974.320 kb on + strand at 1974.367 kb on + strand at 1974.445 kb on - strand at 1974.458 kb on + strand at 1974.606 kb on + strand, within Dsui_1877 at 1974.611 kb on + strand, within Dsui_1877 at 1974.633 kb on + strand at 1974.660 kb on - strand at 1974.792 kb on + strand at 1974.800 kb on + strand, within Dsui_1877 at 1974.929 kb on - strand, within Dsui_1877 at 1975.152 kb on + strand, within Dsui_1877 at 1975.262 kb on + strand, within Dsui_1877 at 1975.425 kb on - strand at 1975.499 kb on + strand at 1975.518 kb on + strand at 1975.521 kb on - strand at 1975.523 kb on + strand at 1975.523 kb on + strand at 1975.531 kb on - strand at 1975.536 kb on + strand at 1975.536 kb on + strand at 1975.536 kb on + strand at 1975.536 kb on + strand at 1975.654 kb on + strand at 1975.666 kb on + strand at 1975.666 kb on + strand at 1975.674 kb on - strand at 1975.808 kb on - strand, within Dsui_1878 at 1975.818 kb on + strand, within Dsui_1878 at 1975.855 kb on + strand, within Dsui_1878 at 1975.858 kb on + strand, within Dsui_1878 at 1975.865 kb on + strand, within Dsui_1878 at 1975.865 kb on + strand at 1975.865 kb on + strand, within Dsui_1878 at 1975.880 kb on + strand, within Dsui_1878 at 1975.929 kb on - strand, within Dsui_1878 at 1975.932 kb on + strand, within Dsui_1878 at 1975.944 kb on - strand at 1976.083 kb on - strand, within Dsui_1878 at 1976.099 kb on + strand, within Dsui_1878 at 1976.175 kb on + strand, within Dsui_1878 at 1976.185 kb on + strand at 1976.278 kb on + strand at 1976.310 kb on + strand, within Dsui_1878 at 1976.372 kb on - strand, within Dsui_1878 at 1976.426 kb on + strand at 1976.437 kb on + strand at 1976.450 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate remove 1,973,526 - Dsui_1875 0.47 +1.2 1,973,545 - Dsui_1875 0.57 +0.6 1,973,581 - Dsui_1875 0.78 +0.4 1,973,601 + -0.1 1,973,601 + +0.3 1,973,645 - -0.7 1,973,828 + Dsui_1876 0.11 +0.7 1,973,892 + Dsui_1876 0.22 +0.0 1,974,068 + Dsui_1876 0.52 -0.6 1,974,142 + Dsui_1876 0.64 +0.6 1,974,147 + Dsui_1876 0.65 -1.2 1,974,224 + Dsui_1876 0.78 -1.7 1,974,313 + -0.5 1,974,320 + -0.7 1,974,367 + -0.9 1,974,445 - +1.6 1,974,458 + +1.6 1,974,606 + Dsui_1877 0.15 -0.4 1,974,611 + Dsui_1877 0.15 -1.0 1,974,633 + +2.2 1,974,660 - +1.2 1,974,792 + +0.3 1,974,800 + Dsui_1877 0.33 +0.4 1,974,929 - Dsui_1877 0.45 -1.2 1,975,152 + Dsui_1877 0.65 -1.5 1,975,262 + Dsui_1877 0.75 -0.7 1,975,425 - +1.2 1,975,499 + +0.6 1,975,518 + +1.6 1,975,521 - -0.4 1,975,523 + -0.2 1,975,523 + +1.2 1,975,531 - +1.2 1,975,536 + -0.2 1,975,536 + +0.6 1,975,536 + -0.8 1,975,536 + -0.1 1,975,654 + -0.2 1,975,666 + -0.7 1,975,666 + -0.4 1,975,674 - +0.2 1,975,808 - Dsui_1878 0.22 -1.4 1,975,818 + Dsui_1878 0.24 +0.2 1,975,855 + Dsui_1878 0.28 +0.4 1,975,858 + Dsui_1878 0.28 -2.2 1,975,865 + Dsui_1878 0.29 +0.8 1,975,865 + +1.6 1,975,865 + Dsui_1878 0.29 +0.2 1,975,880 + Dsui_1878 0.30 +0.6 1,975,929 - Dsui_1878 0.35 +0.6 1,975,932 + Dsui_1878 0.36 +0.4 1,975,944 - +0.9 1,976,083 - Dsui_1878 0.52 -0.7 1,976,099 + Dsui_1878 0.54 -2.8 1,976,175 + Dsui_1878 0.62 -0.7 1,976,185 + +2.2 1,976,278 + -0.2 1,976,310 + Dsui_1878 0.76 +0.4 1,976,372 - Dsui_1878 0.83 -3.2 1,976,426 + -0.2 1,976,437 + +0.3 1,976,450 - -0.4
Or see this region's nucleotide sequence