Strain Fitness in Dechlorosoma suillum PS around Dsui_1877

Experiment: defined media with 30 mM sodium lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1875 and Dsui_1876 are separated by 146 nucleotidesDsui_1876 and Dsui_1877 are separated by 97 nucleotidesDsui_1877 and Dsui_1878 are separated by 69 nucleotidesDsui_1878 and Dsui_1879 overlap by 4 nucleotides Dsui_1875: Dsui_1875 - hypothetical protein, at 1,973,445 to 1,973,618 _1875 Dsui_1876: Dsui_1876 - transcriptional regulator, at 1,973,765 to 1,974,349 _1876 Dsui_1877: Dsui_1877 - NADH:flavin oxidoreductase, at 1,974,447 to 1,975,529 _1877 Dsui_1878: Dsui_1878 - DMT(drug/metabolite transporter) superfamily permease, at 1,975,599 to 1,976,528 _1878 Dsui_1879: Dsui_1879 - luciferase family oxidoreductase, group 1, at 1,976,525 to 1,977,526 _1879 Position (kb) 1974 1975 1976Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1973.526 kb on - strand, within Dsui_1875at 1973.545 kb on - strand, within Dsui_1875at 1973.581 kb on - strand, within Dsui_1875at 1973.601 kb on + strandat 1973.601 kb on + strandat 1973.645 kb on - strandat 1973.828 kb on + strand, within Dsui_1876at 1973.892 kb on + strand, within Dsui_1876at 1974.068 kb on + strand, within Dsui_1876at 1974.142 kb on + strand, within Dsui_1876at 1974.147 kb on + strand, within Dsui_1876at 1974.224 kb on + strand, within Dsui_1876at 1974.313 kb on + strandat 1974.320 kb on + strandat 1974.367 kb on + strandat 1974.445 kb on - strandat 1974.458 kb on + strandat 1974.606 kb on + strand, within Dsui_1877at 1974.611 kb on + strand, within Dsui_1877at 1974.633 kb on + strandat 1974.660 kb on - strandat 1974.792 kb on + strandat 1974.800 kb on + strand, within Dsui_1877at 1974.929 kb on - strand, within Dsui_1877at 1975.152 kb on + strand, within Dsui_1877at 1975.262 kb on + strand, within Dsui_1877at 1975.425 kb on - strandat 1975.499 kb on + strandat 1975.518 kb on + strandat 1975.521 kb on - strandat 1975.523 kb on + strandat 1975.523 kb on + strandat 1975.531 kb on - strandat 1975.536 kb on + strandat 1975.536 kb on + strandat 1975.536 kb on + strandat 1975.536 kb on + strandat 1975.654 kb on + strandat 1975.666 kb on + strandat 1975.666 kb on + strandat 1975.674 kb on - strandat 1975.808 kb on - strand, within Dsui_1878at 1975.818 kb on + strand, within Dsui_1878at 1975.855 kb on + strand, within Dsui_1878at 1975.858 kb on + strand, within Dsui_1878at 1975.865 kb on + strand, within Dsui_1878at 1975.865 kb on + strandat 1975.865 kb on + strand, within Dsui_1878at 1975.880 kb on + strand, within Dsui_1878at 1975.929 kb on - strand, within Dsui_1878at 1975.932 kb on + strand, within Dsui_1878at 1975.944 kb on - strandat 1976.083 kb on - strand, within Dsui_1878at 1976.099 kb on + strand, within Dsui_1878at 1976.175 kb on + strand, within Dsui_1878at 1976.185 kb on + strandat 1976.278 kb on + strandat 1976.310 kb on + strand, within Dsui_1878at 1976.372 kb on - strand, within Dsui_1878at 1976.426 kb on + strandat 1976.437 kb on + strandat 1976.450 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
remove
1,973,526 - Dsui_1875 0.47 +1.2
1,973,545 - Dsui_1875 0.57 +0.6
1,973,581 - Dsui_1875 0.78 +0.4
1,973,601 + -0.1
1,973,601 + +0.3
1,973,645 - -0.7
1,973,828 + Dsui_1876 0.11 +0.7
1,973,892 + Dsui_1876 0.22 +0.0
1,974,068 + Dsui_1876 0.52 -0.6
1,974,142 + Dsui_1876 0.64 +0.6
1,974,147 + Dsui_1876 0.65 -1.2
1,974,224 + Dsui_1876 0.78 -1.7
1,974,313 + -0.5
1,974,320 + -0.7
1,974,367 + -0.9
1,974,445 - +1.6
1,974,458 + +1.6
1,974,606 + Dsui_1877 0.15 -0.4
1,974,611 + Dsui_1877 0.15 -1.0
1,974,633 + +2.2
1,974,660 - +1.2
1,974,792 + +0.3
1,974,800 + Dsui_1877 0.33 +0.4
1,974,929 - Dsui_1877 0.45 -1.2
1,975,152 + Dsui_1877 0.65 -1.5
1,975,262 + Dsui_1877 0.75 -0.7
1,975,425 - +1.2
1,975,499 + +0.6
1,975,518 + +1.6
1,975,521 - -0.4
1,975,523 + -0.2
1,975,523 + +1.2
1,975,531 - +1.2
1,975,536 + -0.2
1,975,536 + +0.6
1,975,536 + -0.8
1,975,536 + -0.1
1,975,654 + -0.2
1,975,666 + -0.7
1,975,666 + -0.4
1,975,674 - +0.2
1,975,808 - Dsui_1878 0.22 -1.4
1,975,818 + Dsui_1878 0.24 +0.2
1,975,855 + Dsui_1878 0.28 +0.4
1,975,858 + Dsui_1878 0.28 -2.2
1,975,865 + Dsui_1878 0.29 +0.8
1,975,865 + +1.6
1,975,865 + Dsui_1878 0.29 +0.2
1,975,880 + Dsui_1878 0.30 +0.6
1,975,929 - Dsui_1878 0.35 +0.6
1,975,932 + Dsui_1878 0.36 +0.4
1,975,944 - +0.9
1,976,083 - Dsui_1878 0.52 -0.7
1,976,099 + Dsui_1878 0.54 -2.8
1,976,175 + Dsui_1878 0.62 -0.7
1,976,185 + +2.2
1,976,278 + -0.2
1,976,310 + Dsui_1878 0.76 +0.4
1,976,372 - Dsui_1878 0.83 -3.2
1,976,426 + -0.2
1,976,437 + +0.3
1,976,450 - -0.4

Or see this region's nucleotide sequence