Strain Fitness in Dechlorosoma suillum PS around Dsui_1686

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1684 and Dsui_1685 are separated by 197 nucleotidesDsui_1685 and Dsui_1686 are separated by 118 nucleotidesDsui_1686 and Dsui_1687 are separated by 74 nucleotidesDsui_1687 and Dsui_1688 are separated by 192 nucleotides Dsui_1684: Dsui_1684 - TonB family protein, at 1,771,612 to 1,772,271 _1684 Dsui_1685: Dsui_1685 - inorganic pyrophosphatase, at 1,772,469 to 1,773,017 _1685 Dsui_1686: Dsui_1686 - NAD+ synthetase, at 1,773,136 to 1,774,761 _1686 Dsui_1687: Dsui_1687 - nitrogen regulatory protein PII, at 1,774,836 to 1,775,174 _1687 Dsui_1688: Dsui_1688 - hypothetical protein, at 1,775,367 to 1,776,413 _1688 Position (kb) 1773 1774 1775Strain fitness (log2 ratio) -1 0 1at 1772.416 kb on + strandat 1772.440 kb on + strandat 1773.011 kb on + strandat 1773.055 kb on + strandat 1774.740 kb on + strandat 1774.807 kb on - strandat 1774.851 kb on + strandat 1774.873 kb on - strandat 1774.883 kb on + strand, within Dsui_1687at 1774.939 kb on - strand, within Dsui_1687at 1775.014 kb on + strand, within Dsui_1687at 1775.022 kb on - strand, within Dsui_1687at 1775.074 kb on - strand, within Dsui_1687at 1775.246 kb on - strandat 1775.272 kb on + strandat 1775.363 kb on + strandat 1775.541 kb on + strandat 1775.541 kb on + strandat 1775.627 kb on - strand, within Dsui_1688

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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1,772,416 + -0.7
1,772,440 + -0.4
1,773,011 + -0.1
1,773,055 + +0.9
1,774,740 + +0.1
1,774,807 - -0.7
1,774,851 + +0.6
1,774,873 - -0.7
1,774,883 + Dsui_1687 0.14 +0.9
1,774,939 - Dsui_1687 0.30 -0.6
1,775,014 + Dsui_1687 0.53 +0.4
1,775,022 - Dsui_1687 0.55 +1.5
1,775,074 - Dsui_1687 0.70 -0.7
1,775,246 - +0.8
1,775,272 + -0.5
1,775,363 + +0.9
1,775,541 + +0.3
1,775,541 + +1.1
1,775,627 - Dsui_1688 0.25 -0.7

Or see this region's nucleotide sequence