Experiment: defined media with 30 mM sodium lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1684 and Dsui_1685 are separated by 197 nucleotides Dsui_1685 and Dsui_1686 are separated by 118 nucleotides Dsui_1686 and Dsui_1687 are separated by 74 nucleotides Dsui_1687 and Dsui_1688 are separated by 192 nucleotides
Dsui_1684: Dsui_1684 - TonB family protein, at 1,771,612 to 1,772,271
_1684
Dsui_1685: Dsui_1685 - inorganic pyrophosphatase, at 1,772,469 to 1,773,017
_1685
Dsui_1686: Dsui_1686 - NAD+ synthetase, at 1,773,136 to 1,774,761
_1686
Dsui_1687: Dsui_1687 - nitrogen regulatory protein PII, at 1,774,836 to 1,775,174
_1687
Dsui_1688: Dsui_1688 - hypothetical protein, at 1,775,367 to 1,776,413
_1688
Position (kb)
1773
1774
1775 Strain fitness (log2 ratio)
-1
0
1 at 1772.416 kb on + strand at 1772.440 kb on + strand at 1773.011 kb on + strand at 1773.055 kb on + strand at 1774.740 kb on + strand at 1774.807 kb on - strand at 1774.851 kb on + strand at 1774.873 kb on - strand at 1774.883 kb on + strand, within Dsui_1687 at 1774.939 kb on - strand, within Dsui_1687 at 1775.014 kb on + strand, within Dsui_1687 at 1775.022 kb on - strand, within Dsui_1687 at 1775.074 kb on - strand, within Dsui_1687 at 1775.246 kb on - strand at 1775.272 kb on + strand at 1775.363 kb on + strand at 1775.541 kb on + strand at 1775.541 kb on + strand at 1775.627 kb on - strand, within Dsui_1688
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate remove 1,772,416 + -0.7 1,772,440 + -0.4 1,773,011 + -0.1 1,773,055 + +0.9 1,774,740 + +0.1 1,774,807 - -0.7 1,774,851 + +0.6 1,774,873 - -0.7 1,774,883 + Dsui_1687 0.14 +0.9 1,774,939 - Dsui_1687 0.30 -0.6 1,775,014 + Dsui_1687 0.53 +0.4 1,775,022 - Dsui_1687 0.55 +1.5 1,775,074 - Dsui_1687 0.70 -0.7 1,775,246 - +0.8 1,775,272 + -0.5 1,775,363 + +0.9 1,775,541 + +0.3 1,775,541 + +1.1 1,775,627 - Dsui_1688 0.25 -0.7
Or see this region's nucleotide sequence