Strain Fitness in Dechlorosoma suillum PS around Dsui_0813

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0812 and Dsui_0813 are separated by 173 nucleotidesDsui_0813 and Dsui_0814 overlap by 1 nucleotides Dsui_0812: Dsui_0812 - ribosomal RNA small subunit methyltransferase RsmB, at 823,351 to 824,688 _0812 Dsui_0813: Dsui_0813 - cation diffusion facilitator family transporter, at 824,862 to 825,764 _0813 Dsui_0814: Dsui_0814 - S1/P1 Nuclease, at 825,764 to 826,687 _0814 Position (kb) 824 825 826Strain fitness (log2 ratio) -2 -1 0 1at 823.926 kb on + strand, within Dsui_0812at 823.931 kb on + strand, within Dsui_0812at 823.936 kb on + strand, within Dsui_0812at 823.936 kb on + strand, within Dsui_0812at 823.936 kb on + strand, within Dsui_0812at 824.009 kb on - strand, within Dsui_0812at 824.017 kb on + strand, within Dsui_0812at 824.023 kb on + strand, within Dsui_0812at 824.025 kb on - strand, within Dsui_0812at 824.067 kb on + strand, within Dsui_0812at 824.095 kb on - strand, within Dsui_0812at 824.185 kb on + strand, within Dsui_0812at 824.222 kb on + strand, within Dsui_0812at 824.230 kb on - strand, within Dsui_0812at 824.270 kb on + strand, within Dsui_0812at 824.273 kb on - strand, within Dsui_0812at 824.329 kb on + strand, within Dsui_0812at 824.329 kb on + strand, within Dsui_0812at 824.329 kb on + strand, within Dsui_0812at 824.329 kb on + strand, within Dsui_0812at 824.337 kb on - strand, within Dsui_0812at 824.337 kb on - strand, within Dsui_0812at 824.337 kb on - strand, within Dsui_0812at 824.337 kb on - strand, within Dsui_0812at 824.342 kb on - strand, within Dsui_0812at 824.344 kb on + strand, within Dsui_0812at 824.344 kb on + strand, within Dsui_0812at 824.352 kb on - strand, within Dsui_0812at 824.357 kb on - strand, within Dsui_0812at 824.357 kb on - strand, within Dsui_0812at 824.376 kb on - strand, within Dsui_0812at 824.386 kb on - strand, within Dsui_0812at 824.392 kb on + strand, within Dsui_0812at 824.410 kb on + strand, within Dsui_0812at 824.413 kb on - strand, within Dsui_0812at 824.413 kb on - strand, within Dsui_0812at 824.432 kb on - strand, within Dsui_0812at 824.444 kb on + strand, within Dsui_0812at 824.457 kb on - strand, within Dsui_0812at 824.467 kb on - strand, within Dsui_0812at 824.469 kb on + strand, within Dsui_0812at 824.474 kb on + strand, within Dsui_0812at 824.482 kb on - strand, within Dsui_0812at 824.508 kb on + strand, within Dsui_0812at 824.512 kb on + strand, within Dsui_0812at 824.519 kb on + strand, within Dsui_0812at 824.527 kb on - strand, within Dsui_0812at 824.563 kb on - strandat 824.619 kb on - strandat 824.653 kb on - strandat 824.653 kb on - strandat 824.684 kb on + strandat 824.734 kb on + strandat 824.761 kb on - strandat 824.794 kb on + strandat 824.825 kb on + strandat 824.825 kb on + strandat 824.825 kb on + strandat 824.830 kb on + strandat 824.844 kb on - strandat 824.867 kb on + strandat 824.867 kb on - strandat 824.870 kb on - strandat 824.875 kb on - strandat 824.877 kb on + strandat 824.880 kb on - strandat 824.885 kb on - strandat 824.890 kb on + strandat 824.943 kb on + strandat 824.943 kb on + strandat 824.948 kb on + strandat 824.948 kb on + strandat 824.951 kb on - strandat 825.021 kb on + strand, within Dsui_0813at 825.021 kb on + strand, within Dsui_0813at 825.080 kb on + strand, within Dsui_0813at 825.083 kb on - strand, within Dsui_0813at 825.088 kb on - strand, within Dsui_0813at 825.118 kb on + strand, within Dsui_0813at 825.127 kb on - strand, within Dsui_0813at 825.143 kb on - strand, within Dsui_0813at 825.147 kb on + strand, within Dsui_0813at 825.204 kb on + strand, within Dsui_0813at 825.212 kb on - strand, within Dsui_0813at 825.214 kb on + strand, within Dsui_0813at 825.268 kb on + strand, within Dsui_0813at 825.292 kb on + strand, within Dsui_0813at 825.292 kb on + strand, within Dsui_0813at 825.300 kb on - strand, within Dsui_0813at 825.300 kb on - strand, within Dsui_0813at 825.307 kb on + strand, within Dsui_0813at 825.314 kb on + strand, within Dsui_0813at 825.314 kb on + strand, within Dsui_0813at 825.314 kb on + strand, within Dsui_0813at 825.314 kb on + strand, within Dsui_0813at 825.314 kb on + strand, within Dsui_0813at 825.315 kb on - strand, within Dsui_0813at 825.322 kb on - strand, within Dsui_0813at 825.322 kb on - strand, within Dsui_0813at 825.322 kb on - strand, within Dsui_0813at 825.322 kb on - strand, within Dsui_0813at 825.322 kb on - strand, within Dsui_0813at 825.322 kb on - strand, within Dsui_0813at 825.322 kb on - strand, within Dsui_0813at 825.334 kb on - strand, within Dsui_0813at 825.349 kb on + strand, within Dsui_0813at 825.364 kb on + strand, within Dsui_0813at 825.396 kb on - strand, within Dsui_0813at 825.412 kb on - strand, within Dsui_0813at 825.431 kb on + strand, within Dsui_0813at 825.436 kb on - strand, within Dsui_0813at 825.438 kb on + strand, within Dsui_0813at 825.455 kb on + strand, within Dsui_0813at 825.525 kb on - strand, within Dsui_0813at 825.569 kb on - strand, within Dsui_0813at 825.658 kb on - strand, within Dsui_0813at 825.758 kb on + strandat 825.818 kb on + strandat 825.832 kb on - strandat 825.871 kb on - strand, within Dsui_0814at 825.910 kb on + strand, within Dsui_0814at 825.918 kb on - strand, within Dsui_0814at 825.920 kb on + strand, within Dsui_0814at 825.920 kb on + strand, within Dsui_0814at 825.928 kb on - strand, within Dsui_0814at 825.929 kb on - strand, within Dsui_0814at 825.986 kb on - strand, within Dsui_0814at 825.998 kb on + strand, within Dsui_0814at 826.006 kb on - strand, within Dsui_0814at 826.079 kb on - strand, within Dsui_0814at 826.085 kb on + strand, within Dsui_0814at 826.109 kb on - strand, within Dsui_0814at 826.125 kb on + strand, within Dsui_0814at 826.135 kb on + strand, within Dsui_0814at 826.140 kb on + strand, within Dsui_0814at 826.192 kb on + strand, within Dsui_0814at 826.237 kb on + strand, within Dsui_0814at 826.242 kb on + strand, within Dsui_0814at 826.245 kb on - strand, within Dsui_0814at 826.249 kb on + strand, within Dsui_0814at 826.252 kb on - strand, within Dsui_0814at 826.254 kb on + strand, within Dsui_0814at 826.369 kb on + strand, within Dsui_0814at 826.379 kb on + strand, within Dsui_0814at 826.422 kb on + strand, within Dsui_0814at 826.461 kb on + strand, within Dsui_0814at 826.471 kb on + strand, within Dsui_0814at 826.471 kb on - strand, within Dsui_0814at 826.473 kb on + strand, within Dsui_0814at 826.491 kb on - strand, within Dsui_0814at 826.546 kb on + strand, within Dsui_0814at 826.591 kb on + strand, within Dsui_0814at 826.593 kb on - strand, within Dsui_0814at 826.606 kb on + strandat 826.614 kb on - strandat 826.633 kb on + strandat 826.641 kb on - strandat 826.663 kb on + strandat 826.699 kb on + strandat 826.699 kb on + strandat 826.707 kb on - strandat 826.707 kb on - strandat 826.707 kb on - strandat 826.753 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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823,926 + Dsui_0812 0.43 -0.3
823,931 + Dsui_0812 0.43 -1.1
823,936 + Dsui_0812 0.44 -0.4
823,936 + Dsui_0812 0.44 -0.4
823,936 + Dsui_0812 0.44 -1.3
824,009 - Dsui_0812 0.49 -1.0
824,017 + Dsui_0812 0.50 +0.3
824,023 + Dsui_0812 0.50 -0.9
824,025 - Dsui_0812 0.50 -0.1
824,067 + Dsui_0812 0.54 -0.7
824,095 - Dsui_0812 0.56 -0.1
824,185 + Dsui_0812 0.62 -2.3
824,222 + Dsui_0812 0.65 +0.7
824,230 - Dsui_0812 0.66 -0.9
824,270 + Dsui_0812 0.69 +1.1
824,273 - Dsui_0812 0.69 -0.4
824,329 + Dsui_0812 0.73 -0.6
824,329 + Dsui_0812 0.73 -0.2
824,329 + Dsui_0812 0.73 -2.1
824,329 + Dsui_0812 0.73 -0.2
824,337 - Dsui_0812 0.74 -1.3
824,337 - Dsui_0812 0.74 -0.9
824,337 - Dsui_0812 0.74 -0.3
824,337 - Dsui_0812 0.74 +0.3
824,342 - Dsui_0812 0.74 -0.2
824,344 + Dsui_0812 0.74 -0.7
824,344 + Dsui_0812 0.74 -1.0
824,352 - Dsui_0812 0.75 -0.6
824,357 - Dsui_0812 0.75 +0.3
824,357 - Dsui_0812 0.75 +0.1
824,376 - Dsui_0812 0.77 +0.0
824,386 - Dsui_0812 0.77 -0.4
824,392 + Dsui_0812 0.78 -0.2
824,410 + Dsui_0812 0.79 -1.3
824,413 - Dsui_0812 0.79 -0.1
824,413 - Dsui_0812 0.79 -0.1
824,432 - Dsui_0812 0.81 -1.0
824,444 + Dsui_0812 0.82 -1.2
824,457 - Dsui_0812 0.83 -0.0
824,467 - Dsui_0812 0.83 +0.1
824,469 + Dsui_0812 0.84 +0.0
824,474 + Dsui_0812 0.84 -0.8
824,482 - Dsui_0812 0.85 -0.8
824,508 + Dsui_0812 0.86 -0.4
824,512 + Dsui_0812 0.87 -0.6
824,519 + Dsui_0812 0.87 -0.2
824,527 - Dsui_0812 0.88 -0.6
824,563 - -0.1
824,619 - -0.4
824,653 - -0.5
824,653 - +0.3
824,684 + -0.1
824,734 + -0.2
824,761 - +0.0
824,794 + -0.0
824,825 + -0.7
824,825 + -0.6
824,825 + -0.1
824,830 + -0.0
824,844 - +0.3
824,867 + -0.6
824,867 - -0.5
824,870 - -0.4
824,875 - -0.9
824,877 + -0.7
824,880 - -0.0
824,885 - -0.2
824,890 + -0.2
824,943 + -0.3
824,943 + +0.6
824,948 + -0.2
824,948 + -0.3
824,951 - +0.0
825,021 + Dsui_0813 0.18 -0.5
825,021 + Dsui_0813 0.18 -0.3
825,080 + Dsui_0813 0.24 -0.1
825,083 - Dsui_0813 0.24 -0.2
825,088 - Dsui_0813 0.25 -0.3
825,118 + Dsui_0813 0.28 +0.1
825,127 - Dsui_0813 0.29 -0.3
825,143 - Dsui_0813 0.31 +0.1
825,147 + Dsui_0813 0.32 -0.1
825,204 + Dsui_0813 0.38 +0.1
825,212 - Dsui_0813 0.39 -0.2
825,214 + Dsui_0813 0.39 +0.2
825,268 + Dsui_0813 0.45 -0.3
825,292 + Dsui_0813 0.48 -0.1
825,292 + Dsui_0813 0.48 -0.0
825,300 - Dsui_0813 0.49 -0.5
825,300 - Dsui_0813 0.49 +0.1
825,307 + Dsui_0813 0.49 -0.2
825,314 + Dsui_0813 0.50 -0.1
825,314 + Dsui_0813 0.50 -0.2
825,314 + Dsui_0813 0.50 -0.0
825,314 + Dsui_0813 0.50 -0.0
825,314 + Dsui_0813 0.50 -0.2
825,315 - Dsui_0813 0.50 +0.2
825,322 - Dsui_0813 0.51 +0.1
825,322 - Dsui_0813 0.51 -0.5
825,322 - Dsui_0813 0.51 -1.2
825,322 - Dsui_0813 0.51 +0.2
825,322 - Dsui_0813 0.51 +0.0
825,322 - Dsui_0813 0.51 +0.5
825,322 - Dsui_0813 0.51 +0.1
825,334 - Dsui_0813 0.52 -0.3
825,349 + Dsui_0813 0.54 -0.1
825,364 + Dsui_0813 0.56 +0.3
825,396 - Dsui_0813 0.59 -0.6
825,412 - Dsui_0813 0.61 -0.5
825,431 + Dsui_0813 0.63 +1.3
825,436 - Dsui_0813 0.64 -0.1
825,438 + Dsui_0813 0.64 +0.1
825,455 + Dsui_0813 0.66 -0.0
825,525 - Dsui_0813 0.73 -0.3
825,569 - Dsui_0813 0.78 -0.6
825,658 - Dsui_0813 0.88 -0.2
825,758 + +0.1
825,818 + -0.2
825,832 - +0.8
825,871 - Dsui_0814 0.12 -0.0
825,910 + Dsui_0814 0.16 +0.0
825,918 - Dsui_0814 0.17 -0.6
825,920 + Dsui_0814 0.17 -0.1
825,920 + Dsui_0814 0.17 -0.1
825,928 - Dsui_0814 0.18 +0.7
825,929 - Dsui_0814 0.18 -0.7
825,986 - Dsui_0814 0.24 -0.2
825,998 + Dsui_0814 0.25 -0.1
826,006 - Dsui_0814 0.26 +0.8
826,079 - Dsui_0814 0.34 -0.0
826,085 + Dsui_0814 0.35 -0.3
826,109 - Dsui_0814 0.37 -0.2
826,125 + Dsui_0814 0.39 -0.0
826,135 + Dsui_0814 0.40 -0.1
826,140 + Dsui_0814 0.41 -0.7
826,192 + Dsui_0814 0.46 -0.3
826,237 + Dsui_0814 0.51 +0.3
826,242 + Dsui_0814 0.52 +0.3
826,245 - Dsui_0814 0.52 -0.1
826,249 + Dsui_0814 0.52 -0.2
826,252 - Dsui_0814 0.53 -0.4
826,254 + Dsui_0814 0.53 -0.2
826,369 + Dsui_0814 0.65 +0.3
826,379 + Dsui_0814 0.67 -0.4
826,422 + Dsui_0814 0.71 -0.1
826,461 + Dsui_0814 0.75 -0.3
826,471 + Dsui_0814 0.77 -0.4
826,471 - Dsui_0814 0.77 -0.0
826,473 + Dsui_0814 0.77 -0.3
826,491 - Dsui_0814 0.79 -0.1
826,546 + Dsui_0814 0.85 -0.4
826,591 + Dsui_0814 0.90 -0.2
826,593 - Dsui_0814 0.90 -0.2
826,606 + -0.1
826,614 - -0.0
826,633 + -0.3
826,641 - -0.3
826,663 + +0.1
826,699 + -0.5
826,699 + -0.1
826,707 - -0.1
826,707 - -0.6
826,707 - +0.0
826,753 - -0.1

Or see this region's nucleotide sequence