Experiment: defined media with 30 mM sodium lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0724 and Dsui_0725 are separated by 99 nucleotides Dsui_0725 and Dsui_0726 are separated by 2 nucleotides Dsui_0726 and Dsui_0727 are separated by 35 nucleotides
Dsui_0724: Dsui_0724 - ABC-type multidrug transport system, ATPase component, at 719,078 to 720,001
_0724
Dsui_0725: Dsui_0725 - putative hydrolase of the alpha/beta superfamily, at 720,101 to 720,739
_0725
Dsui_0726: Dsui_0726 - ferredoxin, at 720,742 to 721,050
_0726
Dsui_0727: Dsui_0727 - putative integral membrane protein, at 721,086 to 722,141
_0727
Position (kb) 720
721 Strain fitness (log2 ratio) -2
-1
0
1
2 at 719.166 kb on - strand at 719.326 kb on + strand, within Dsui_0724 at 719.422 kb on + strand at 719.430 kb on + strand, within Dsui_0724 at 719.430 kb on - strand, within Dsui_0724 at 719.430 kb on - strand, within Dsui_0724 at 719.499 kb on + strand, within Dsui_0724 at 719.499 kb on + strand, within Dsui_0724 at 719.596 kb on - strand, within Dsui_0724 at 719.692 kb on - strand, within Dsui_0724 at 719.851 kb on + strand at 719.980 kb on - strand at 719.999 kb on - strand at 720.138 kb on - strand at 720.207 kb on + strand, within Dsui_0725 at 720.210 kb on - strand, within Dsui_0725 at 720.215 kb on - strand, within Dsui_0725 at 720.215 kb on - strand, within Dsui_0725 at 720.277 kb on - strand, within Dsui_0725 at 720.384 kb on + strand, within Dsui_0725 at 720.461 kb on + strand, within Dsui_0725 at 720.531 kb on - strand, within Dsui_0725 at 720.589 kb on - strand, within Dsui_0725 at 720.664 kb on + strand, within Dsui_0725 at 720.729 kb on - strand at 720.804 kb on + strand at 720.830 kb on - strand, within Dsui_0726 at 720.832 kb on + strand, within Dsui_0726 at 720.845 kb on - strand, within Dsui_0726 at 720.845 kb on - strand, within Dsui_0726 at 720.911 kb on - strand, within Dsui_0726 at 720.958 kb on - strand, within Dsui_0726 at 721.033 kb on + strand at 721.106 kb on + strand at 721.141 kb on - strand at 721.154 kb on + strand at 721.244 kb on + strand, within Dsui_0727 at 721.330 kb on + strand, within Dsui_0727 at 721.358 kb on + strand at 721.397 kb on - strand, within Dsui_0727 at 721.541 kb on + strand, within Dsui_0727
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate remove 719,166 - -0.2 719,326 + Dsui_0724 0.27 -0.2 719,422 + +1.1 719,430 + Dsui_0724 0.38 -0.6 719,430 - Dsui_0724 0.38 -0.7 719,430 - Dsui_0724 0.38 +1.8 719,499 + Dsui_0724 0.46 -1.6 719,499 + Dsui_0724 0.46 -0.3 719,596 - Dsui_0724 0.56 +0.0 719,692 - Dsui_0724 0.66 -0.3 719,851 + -0.2 719,980 - +0.7 719,999 - +0.1 720,138 - -1.3 720,207 + Dsui_0725 0.17 -1.6 720,210 - Dsui_0725 0.17 -0.2 720,215 - Dsui_0725 0.18 +1.1 720,215 - Dsui_0725 0.18 -1.1 720,277 - Dsui_0725 0.28 -1.6 720,384 + Dsui_0725 0.44 -1.8 720,461 + Dsui_0725 0.56 -0.6 720,531 - Dsui_0725 0.67 -1.3 720,589 - Dsui_0725 0.76 -0.5 720,664 + Dsui_0725 0.88 -0.9 720,729 - -1.3 720,804 + +0.8 720,830 - Dsui_0726 0.28 -1.2 720,832 + Dsui_0726 0.29 -1.5 720,845 - Dsui_0726 0.33 -0.7 720,845 - Dsui_0726 0.33 -1.3 720,911 - Dsui_0726 0.55 -0.2 720,958 - Dsui_0726 0.70 -0.2 721,033 + +0.5 721,106 + -0.3 721,141 - -0.6 721,154 + -0.6 721,244 + Dsui_0727 0.15 -0.1 721,330 + Dsui_0727 0.23 -1.1 721,358 + +0.8 721,397 - Dsui_0727 0.29 -1.0 721,541 + Dsui_0727 0.43 -1.2
Or see this region's nucleotide sequence