Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1701

Experiment: MoYLS4 with Spectinomycin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1700 and DvMF_1701 are separated by 313 nucleotidesDvMF_1701 and rpsA are separated by 295 nucleotides DvMF_1700: DvMF_1700 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 2,073,272 to 2,075,047 _1700 DvMF_1701: DvMF_1701 - MiaB-like tRNA modifying enzyme YliG (RefSeq), at 2,075,361 to 2,076,746 _1701 DvMF_1702: rpsA - 30S ribosomal protein S1 (RefSeq), at 2,077,042 to 2,078,775 rpsA Position (kb) 2075 2076 2077Strain fitness (log2 ratio) -1 0 1at 2074.390 kb on + strand, within DvMF_1700at 2074.554 kb on - strand, within DvMF_1700at 2074.636 kb on + strand, within DvMF_1700at 2074.882 kb on + strandat 2074.963 kb on + strandat 2075.134 kb on - strandat 2075.234 kb on - strandat 2075.336 kb on - strandat 2075.494 kb on - strandat 2075.540 kb on + strand, within DvMF_1701at 2075.544 kb on - strand, within DvMF_1701at 2075.548 kb on - strand, within DvMF_1701at 2075.959 kb on - strand, within DvMF_1701at 2076.047 kb on - strand, within DvMF_1701at 2076.060 kb on + strand, within DvMF_1701at 2076.219 kb on + strand, within DvMF_1701at 2076.264 kb on + strand, within DvMF_1701at 2076.300 kb on + strand, within DvMF_1701at 2076.663 kb on - strandat 2076.701 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.0125 mg/ml
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2,074,390 + DvMF_1700 0.63 +0.5
2,074,554 - DvMF_1700 0.72 -0.2
2,074,636 + DvMF_1700 0.77 -0.2
2,074,882 + -0.7
2,074,963 + -0.2
2,075,134 - +0.8
2,075,234 - -0.5
2,075,336 - -0.2
2,075,494 - -0.4
2,075,540 + DvMF_1701 0.13 -0.0
2,075,544 - DvMF_1701 0.13 -0.4
2,075,548 - DvMF_1701 0.13 -0.3
2,075,959 - DvMF_1701 0.43 -0.3
2,076,047 - DvMF_1701 0.49 -0.0
2,076,060 + DvMF_1701 0.50 -0.4
2,076,219 + DvMF_1701 0.62 -0.2
2,076,264 + DvMF_1701 0.65 -0.5
2,076,300 + DvMF_1701 0.68 -0.3
2,076,663 - -0.2
2,076,701 + -0.1

Or see this region's nucleotide sequence